View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_high_19 (Length: 277)
Name: NF17211_high_19
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_high_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 3606897 - 3607181
Alignment:
| Q |
1 |
tttttagacggcgtgaaactagtcaccatcacttgaattctaacaagttagatgtccaattccttacttgtaattttacgatgaagtaaatatattgtat |
100 |
Q |
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| T |
3606897 |
tttttagacggcgtgaaactagtcaccatcacttgaattctaacaagttagatgtccatttccttacttgtaattttaagatgaagtaaatatattgtat |
3606996 |
T |
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| Q |
101 |
tagcctc------nnnnnnnnnnnattgaaattgaggtagctattgcaattccaaatgaatataaagttgagtnnnnnnnnnngcaaattccaatccaaa |
194 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3606997 |
tagtctctctgtttttttttttttattgaaattgaggtagctattgcaattccaaatgaatataaagttgagtaaaaaaaaatgcaaattccaatccaaa |
3607096 |
T |
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| Q |
195 |
ttcgaaccgaatgagcaacttgataagatgtggttcctcttgcaagaatataaa--tgtgggtcatcatattagtttggtctttt |
277 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
3607097 |
ttcgaaccgaatgagcaacttgataatacgtggttcctcttgcaagaatataaatgtgtgtgtcatcatattagtttggtctttt |
3607181 |
T |
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