View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_high_20 (Length: 272)
Name: NF17211_high_20
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_high_20 |
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| [»] chr7 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 34467345 - 34467600
Alignment:
| Q |
17 |
atgaatgtcatgatccctccagtttcattaacagtattagatatgtttagataatagcattcataaattgtgcgagaaataataataataccgagcagtg |
116 |
Q |
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| T |
34467345 |
atgaatgtcatgatccctccagtttcattaacagtattagatatgtttagataatagcattcataaattgtgtgagaaataataataatactgagcagtg |
34467444 |
T |
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| Q |
117 |
ctattcttcacgagagaaatcctcccgagagcatcgcgaaaacaagcacagccaatgaaaatgcagtgcctagcggaaaacacggcgggatggcggaaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| | | ||||||||||||| |
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| T |
34467445 |
ctattcttcacgagagaaatcctcccgagagcatcgcgaaaacaagcacagccaatgaaaatgtagtgcctaacggaaaacatgtcaggatggcggaaaa |
34467544 |
T |
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| Q |
217 |
catggaatccaaaaccactaaaacatgccaagtgtctcgtgaactccttcgttgtc |
272 |
Q |
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| T |
34467545 |
cacggaatccaaaaccactaaaacatgccaagtgtctcatgaactccttcgctgtc |
34467600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 166 - 267
Target Start/End: Original strand, 50644645 - 50644746
Alignment:
| Q |
166 |
agccaatgaaaatgcagtgcctagcggaaaacacggcgggatggcggaaaacatggaatccaaaaccactaaaacatgccaagtgtctcgtgaactcctt |
265 |
Q |
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||||||||||||| ||||||||||||||||||||| ||| |||||||| |||| || ||||| ||| ||||| |||||| |||||||||||||| || |
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| T |
50644645 |
agccaatgaaaattcagtgcctagcggaaaacacgacggaatggcggagaacacaaaagccaaagccattaaaatttgccaactgtctcgtgaactcatt |
50644744 |
T |
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| Q |
266 |
cg |
267 |
Q |
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|| |
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| T |
50644745 |
cg |
50644746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 220 - 272
Target Start/End: Complemental strand, 14195289 - 14195237
Alignment:
| Q |
220 |
ggaatccaaaaccactaaaacatgccaagtgtctcgtgaactccttcgttgtc |
272 |
Q |
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| T |
14195289 |
ggaatccaaaaccactaaaacatgccaagtgtctcgtgaacttcttcgctgtc |
14195237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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