View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_high_23 (Length: 259)
Name: NF17211_high_23
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 5746828 - 5746599
Alignment:
| Q |
17 |
ataacgttgtgcattcggttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaactttcgctgaaaaatgttgacggtaag |
116 |
Q |
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| T |
5746828 |
ataacgttgtgcagtcggttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaacta---ctgaaaaatgttgacggtaag |
5746732 |
T |
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| Q |
117 |
ttaactctcgattaaggaagcaaagtaattttcttacatgtaatgaatgtagcatgggccttataacccaagcccattagtacaactcccacctttcatt |
216 |
Q |
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| T |
5746731 |
ttaactctcgattaaggaagcaaagtaattttcttacatgtaatgaatgtagcatgggccttataacccaagcccattagtacaactcccacctttcatt |
5746632 |
T |
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| Q |
217 |
tttccattaaaaccactaaacttctaacttcat |
249 |
Q |
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| T |
5746631 |
tttccattaaaaccactaaacttctaacttcat |
5746599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 16238818 - 16238890
Alignment:
| Q |
34 |
gttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaactttcgctgaaaaatgt |
106 |
Q |
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| T |
16238818 |
gttcaatcattttttaaatcgagtcaaccaatcttaaaagtctcagcatgagttaactaccgctgaaaaatgt |
16238890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 12137155 - 12137201
Alignment:
| Q |
34 |
gttcaatcattttttaaatcgggtt-aaccaatcttaaaaatatcaa |
79 |
Q |
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| T |
12137155 |
gttcaatcattttttaaatcaggtttaaccaatcttaaaaatatcaa |
12137201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 6521116 - 6521161
Alignment:
| Q |
34 |
gttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaa |
79 |
Q |
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| T |
6521116 |
gttcaatcattttttaaatcgatttaaccaatcttaaaaatgtcaa |
6521161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 40413486 - 40413426
Alignment:
| Q |
31 |
tcggttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaact |
91 |
Q |
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| T |
40413486 |
tcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaact |
40413426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 20694652 - 20694578
Alignment:
| Q |
35 |
ttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaactttcgctgaaaaatgttga |
109 |
Q |
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| T |
20694652 |
ttcaatcactttttaagttgagtcaaccaatcttaaaagtgccaccgtgagttaactatcgctgaaaaatgttga |
20694578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 2424550 - 2424607
Alignment:
| Q |
47 |
ttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaactttcgctgaaaaat |
104 |
Q |
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| T |
2424550 |
ttaaatcggtttaaccgatcttaaaagtgttagcgtaagttaacttccgctgaaaaat |
2424607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 29204634 - 29204707
Alignment:
| Q |
31 |
tcggttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaactttcgctgaaaaat |
104 |
Q |
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| T |
29204634 |
tcggttcaatcactttttaagtcggatcaactgatcttaaaagtgacagcgtaagttaacttacgctgaaaaat |
29204707 |
T |
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