View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17211_high_4 (Length: 485)

Name: NF17211_high_4
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17211_high_4
NF17211_high_4
[»] chr2 (7 HSPs)
chr2 (10-476)||(2326988-2327454)
chr2 (53-476)||(2330703-2331126)
chr2 (31-455)||(2303454-2303878)
chr2 (20-455)||(2321155-2321591)
chr2 (33-455)||(2293841-2294263)
chr2 (33-455)||(2310172-2310594)
chr2 (10-455)||(2351030-2351475)
[»] chr8 (5 HSPs)
chr8 (16-441)||(41127050-41127478)
chr8 (217-351)||(26506749-26506883)
chr8 (217-330)||(26494725-26494838)
chr8 (67-183)||(26494893-26495009)
chr8 (374-448)||(26494607-26494681)
[»] chr4 (1 HSPs)
chr4 (153-200)||(55017070-55017117)
[»] chr5 (1 HSPs)
chr5 (68-189)||(15176287-15176408)


Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 10 - 476
Target Start/End: Complemental strand, 2327454 - 2326988
Alignment:
Q  10 catcatcacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 109  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327454 catcaccacggtgaattcaaatttttctgacaaatcgacatggccaccctccggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 2327355  T
Q  110 aaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcat 209  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327354 aaatggagtaaagctaaattatatcccggacaaattctcctaccagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcat 2327255  T
Q  210 ccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttagg 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2327254 ccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttagg 2327155  T
Q  310 caccaaataaccattcaaaaccacatcatcgctcattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttc 409  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2327154 caccaaataaccattcaaaaccacatcatcgctcactgcatgaggcaacacaaaatgccctggtggatgacgcctcaacccttccaaaaccacacacttc 2327055  T
Q  410 aaataccgaagtttatgcaagtcttcctctttcacttcctccttctttacaacaccatcaccaccca 476  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  2327054 aaataccgaagtttatgcaagtcttcctctttcacttcctccttctctacaacaccatcaccaccca 2326988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 53 - 476
Target Start/End: Complemental strand, 2331126 - 2330703
Alignment:
Q  53 ccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctat 152  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| ||      
T  2331126 ccaccctcgggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatgaagcaaagctaaattatatccaggacaaattctcctcc 2331027  T
Q  153 cagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggcttaaactccattggatcctccca 252  Q
    |||||||||| ||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  2331026 cagctccaaatggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggcttaaattccattggatcctccca 2330927  T
Q  253 aacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaaccacatcatcgctcattgcatga 352  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |||    
T  2330926 aacacgagggtccaaccccatctctgcaaccataaaattcaccgtcccatctttaggcaccaaataaccattcaaaaccacatcctcgctcactgcgtga 2330827  T
Q  353 ggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcctcct 452  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  2330826 ggcaacacgaaatgccctggtggatgacgcctcaacccttccaaaaccacgcacttcaaataccgaagtttatgcaagtcttcctctttcacttcctcct 2330727  T
Q  453 tctttacaacaccatcaccaccca 476  Q
    ||| | || || |||| |||||||    
T  2330726 tctctccagcatcatcgccaccca 2330703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 31 - 455
Target Start/End: Complemental strand, 2303878 - 2303454
Alignment:
Q  31 tttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaatta 130  Q
    ||||||||||||||| |||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  2303878 tttttccgacaaatcaacatagccgccctctggaagcttccaatcgaaattccaaaccaaattagccacaaaatattctaaatggagcaaagctaaatta 2303779  T
Q  131 tatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggct 230  Q
      | | ||||||||||| || |||||| |||||||||||||||| ||||| |||||||||||||| |||||| ||||||||||| |||||||||||||||    
T  2303778 agtgcaggacaaattctcctttcagcttcaaacggcatcatctttatctccttactccctgtaatgtcaaaattctcatccttccaaaacctttctggct 2303679  T
Q  231 taaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaac 330  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  2303678 taaactccattggatcctcccaaacacgaggatcccaccccatctccgccagcatgaaattcaccgtcccatttttaggcaccaaataaccgttcaaaac 2303579  T
Q  331 cacatcatcgctcattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaag 430  Q
    |||||| ||  |||  || || ||||||| ||||||||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |||||     
T  2303578 cacatcctctttcaccgcgtgtggcaacagaaaatgccccggtggatgacgcctcaacccttccaaaacaacacatttcaaataccgaagtttctgcaat 2303479  T
Q  431 tcttcctctttcacttcctccttct 455  Q
    |||||||||||||||||||||||||    
T  2303478 tcttcctctttcacttcctccttct 2303454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 20 - 455
Target Start/End: Complemental strand, 2321591 - 2321155
Alignment:
Q  20 gtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagta 119  Q
    |||||||||  ||||||||||||||| |||||||||||||| |||| || ||||| ||||||||||||||| |||||||||||||||||||||||||| |    
T  2321591 gtgaattcatctttttccgacaaatcaacatggccaccctccggaagctgccaattgaaattccaaaccaagttagccacaaaatattccaaatggagca 2321492  T
Q  120 aagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaa 219  Q
    |||||||||||  ||| ||||||||||| ||  |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  2321491 aagctaaattaagtccgggacaaattctccttccagctccaaacggcatcatctttatctctttactccctataatatcaaaagtctcatccttcaaaaa 2321392  T
Q  220 cctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataa 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || ||||||| | || |||||||||||||||||||||||||||||||||||||    
T  2321391 cctttctggcttaaactccattggatcctcccaaacacgaggatcccacgccatctccgacagcatgaaattcaccgtcccatttttaggcaccaaataa 2321292  T
Q  320 ccattcaaaaccacatcatcgctcattgcatgaggcaacacaaaatg-ccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccga 418  Q
    || |||||||||||||| ||  |||  |  || | |||||||||||| |||||||||||||||||| | ||||||||||||||| ||||||||||| |||    
T  2321291 ccgttcaaaaccacatcctctttcaccgtgtgtgccaacacaaaatgcccctggtggatgacgcctcatcccttccaaaaccacgcacttcaaatatcga 2321192  T
Q  419 agtttatgcaagtcttcctctttcacttcctccttct 455  Q
    ||||| ||||||| |||||||||||||||||||||||    
T  2321191 agtttctgcaagttttcctctttcacttcctccttct 2321155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 33 - 455
Target Start/End: Complemental strand, 2294263 - 2293841
Alignment:
Q  33 tttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattata 132  Q
    |||||| |||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||      
T  2294263 tttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaagttagccacaaaatattccaaatggagcaaagctaaattaag 2294164  T
Q  133 tcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggctta 232  Q
    ||| ||||||||||||||  |||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  2294163 tccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctgtaatgtcaaaagtctcatccttcaaaaacctttctggctta 2294064  T
Q  233 aactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaacca 332  Q
    |||||||  || |||||||||||||||||||||||| ||||||| |||| || ||||||||||||||| |||||||||||||||||||| | ||||||||    
T  2294063 aactccaacgggtcctcccaaacacgaggatccaacgccatctccgccagcaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaacca 2293964  T
Q  333 catcatcgctcattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtc 432  Q
    |||| ||  |||  || || ||||||  ||| | ||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||    
T  2293963 catcctctttcaccgcgtgtggcaacggaaatttccccggtggatgacgcctcaacccttccaaaaccacacacttcaaataccgaagtttctgcaagtc 2293864  T
Q  433 ttcctctttcacttcctccttct 455  Q
    |||||||||||||||||||||||    
T  2293863 ttcctctttcacttcctccttct 2293841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 33 - 455
Target Start/End: Complemental strand, 2310594 - 2310172
Alignment:
Q  33 tttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattata 132  Q
    |||||| |||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      
T  2310594 tttccgtcaaatcaacatgcccgccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagcaaagctaaattaag 2310495  T
Q  133 tcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatccttcaaaaacctttctggctta 232  Q
    ||| ||||||||||||||  |||||||||||||||||||||| ||||||||||| |||| |||  |||||||||||||||||||||||||||||||||||    
T  2310494 tccgggacaaattcttcttccagctccaaacggcatcatctttatctctttacttcctggaatgacaaaagtctcatccttcaaaaacctttctggctta 2310395  T
Q  233 aactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaataaccattcaaaacca 332  Q
    ||||||| ||| ||||||||||||||| |||||||| ||||||| ||||  | ||||||||||||||| |||||||||||||||||||| | ||||||||    
T  2310394 aactccaatgggtcctcccaaacacgacgatccaacgccatctccgccagaaagaaattcaccgtcccgtttttaggcaccaaataaccgtccaaaacca 2310295  T
Q  333 catcatcgctcattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtc 432  Q
    |||| ||  |||  || || ||||||  ||| | ||| | |||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||    
T  2310294 catcctctttcaccgcgtgtggcaacggaaatttccccgatggatgacgcctcaacccttccaaaaccacacacttcaaataccaaagtttctgcaagtc 2310195  T
Q  433 ttcctctttcacttcctccttct 455  Q
    |||||||||||||||||||||||    
T  2310194 ttcctctttcacttcctccttct 2310172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 455
Target Start/End: Complemental strand, 2351475 - 2351030
Alignment:
Q  10 catcatcacggtgaattcaaatttttccgacaaatcgacatggccaccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 109  Q
    ||||| ||| ||||||||   ||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2351475 catcaccacagtgaattcttgtttttccgacaaatcaacatgcccaccttctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattcc 2351376  T
Q  110 aaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcat 209  Q
    || || || ||||||||||||||||| ||||| ||||| ||| || | ||||| ||||||||||| |||||||||||||| ||||| ||||| || ||||    
T  2351375 aagtgaagcaaagctaaattatatccgggacagattctcctaccaacaccaaatggcatcatctttatctctttactccccgtaatgtcaaatgtttcat 2351276  T
Q  210 ccttcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttagg 309  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||    
T  2351275 ccttcaaaaacctctctggcttaaactccattggatcctcccaaacacgaggatcccaccccatctctgccaccataaaattgaccgtcccatttttagg 2351176  T
Q  310 caccaaataaccattcaaaaccacatcatcgctcattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttc 409  Q
    |||||||||||| || |||| |||||| ||  |||  || || |||||||||  |||||| |||||||||||||| |||||||||||||||||||| |||    
T  2351175 caccaaataaccgttaaaaagcacatcctctgtcaccgcgtgtggcaacacattatgccccggtggatgacgcctcaacccttccaaaaccacacatttc 2351076  T
Q  410 aaataccgaagtttatgcaagtcttcctctttcacttcctccttct 455  Q
    | ||||  |||||| ||||| |||||||||||||||||| ||||||    
T  2351075 agatacaaaagtttctgcaaatcttcctctttcacttccaccttct 2351030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 16 - 441
Target Start/End: Complemental strand, 41127478 - 41127050
Alignment:
Q  16 cacggtgaattcaaatttttccgacaaatcgacatggcca---ccctctggaaccttccaatcgaaattccaaaccaaattagccacaaaatattccaaa 112  Q
    |||||||||||||  ||||||||||||||| ||||  |||   |||||| ||| ||||||||  |||||||| ||||||||||||||||| |||||||||    
T  41127478 cacggtgaattcagttttttccgacaaatcaacataaccagctccctctagaatcttccaattaaaattccagaccaaattagccacaaagtattccaaa 41127379  T
Q  113 tggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggcatcatcttgatctctttactccctgtaatatcaaaagtctcatcct 212  Q
    ||||| ||||||||||||||||| ||||||||||| ||  || ||||||||||||||||||| ||||||||| |||| ||||||||||||| ||||||||    
T  41127378 tggagcaaagctaaattatatccaggacaaattctcctcccaactccaaacggcatcatctttatctctttagtcccggtaatatcaaaagcctcatcct 41127279  T
Q  213 tcaaaaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcac 312  Q
    |||||||||||||||| |||||||||| |||||| |||||||||| ||| |||  ||| || ||||||||||||||||||||   | ||||||||||||     
T  41127278 tcaaaaacctttctggtttaaactccaatggatcttcccaaacactagggtccctccctatgtctgccaccatgaaattcactaccacatttttaggcag 41127179  T
Q  313 caaataaccattcaaaaccacatcatcgctcattgcatgaggcaacacaaaatgccctggtggatgacgccttaacccttccaaaaccacacacttcaaa 412  Q
    ||| ||||| |  ||||||||||| ||  |||  ||||| ||||||||||| ||||| ||||| |||| ||| | ||||||||||| ||||||||| | |    
T  41127178 caagtaaccgtcgaaaaccacatcctccttcaccgcatggggcaacacaaagtgccccggtgggtgacacctcagcccttccaaaatcacacactttaga 41127079  T
Q  413 taccgaagtttatgcaagtcttcctcttt 441  Q
    ||  | || || |||||||||||||||||    
T  41127078 tatggtaggttctgcaagtcttcctcttt 41127050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 217 - 351
Target Start/End: Complemental strand, 26506883 - 26506749
Alignment:
Q  217 aaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaa 316  Q
    |||||| |||||||| ||  |||| ||||||||||||||||  |||||| |||| | |||||||||||| ||||| || ||||||||||||||||||||     
T  26506883 aaacctatctggcttgaatgccatgggatcctcccaaacacttggatcccacccaacctctgccaccataaaattaactgtcccatttttaggcaccaag 26506784  T
Q  317 taaccattcaaaaccacatcatcgctcattgcatg 351  Q
    ||||| || |||| |||||| ||| ||| ||||||    
T  26506783 taaccgttaaaaatcacatcctcggtcactgcatg 26506749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 217 - 330
Target Start/End: Complemental strand, 26494838 - 26494725
Alignment:
Q  217 aaacctttctggcttaaactccattggatcctcccaaacacgaggatccaaccccatctctgccaccatgaaattcaccgtcccatttttaggcaccaaa 316  Q
    |||||| |||||||||||| || | ||||||||||||||    ||||| || || || ||||||||||| |||||||| ||||||||||||||||||||     
T  26494838 aaacctctctggcttaaacaccgtaggatcctcccaaaccgttggatctaatcctatatctgccaccataaaattcacagtcccatttttaggcaccaag 26494739  T
Q  317 taaccattcaaaac 330  Q
    ||||||||||||||    
T  26494738 taaccattcaaaac 26494725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 67 - 183
Target Start/End: Complemental strand, 26495009 - 26494893
Alignment:
Q  67 cttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggc 166  Q
    |||||| || || ||| ||||||||||||| ||||| ||||| |||||||| |  || || |||||  | |||||||| || ||  | ||||||||||||    
T  26495009 cttccactcaaagttcaaaaccaaattagcaacaaagtattctaaatggagcattgccaatttataggcaggacaaatcctcctccctgctccaaacggc 26494910  T
Q  167 atcatcttgatctcttt 183  Q
    |||||||| ||||||||    
T  26494909 atcatctttatctcttt 26494893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 448
Target Start/End: Complemental strand, 26494681 - 26494607
Alignment:
Q  374 ggatgacgccttaacccttccaaaaccacacacttcaaataccgaagtttatgcaagtcttcctctttcacttcc 448  Q
    ||||||||||||||||||||||||| ||||  |||||||||  | | ||| | ||| ||||||||| ||||||||    
T  26494681 ggatgacgccttaacccttccaaaatcacagccttcaaatatggcaatttctccaaatcttcctctctcacttcc 26494607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Complemental strand, 55017117 - 55017070
Alignment:
Q  153 cagctccaaacggcatcatcttgatctctttactccctgtaatatcaa 200  Q
    |||| ||||||||||||||||| ||||||||| | |||||||||||||    
T  55017117 cagcaccaaacggcatcatcttcatctctttagttcctgtaatatcaa 55017070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 68 - 189
Target Start/End: Original strand, 15176287 - 15176408
Alignment:
Q  68 ttccaatcgaaattccaaaccaaattagccacaaaatattccaaatggagtaaagctaaattatatcccggacaaattcttctatcagctccaaacggca 167  Q
    ||||| || |||||| |||| ||||| || ||||| |||||||| || |  || ||||||  ||| || ||||| ||||| ||  | |||||||| ||||    
T  15176287 ttccactcaaaattcaaaacaaaattggcaacaaagtattccaagtgcaacaatgctaaaccatagccaggacacattctcctccctgctccaaatggca 15176386  T
Q  168 tcatcttgatctctttactccc 189  Q
    ||||||| ||||||||||||||    
T  15176387 tcatctttatctctttactccc 15176408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University