View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_high_6 (Length: 400)
Name: NF17211_high_6
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 10 - 383
Target Start/End: Original strand, 39727751 - 39728123
Alignment:
| Q |
10 |
ataattcttggtaaagaattctgttcaatagttacatatatagctaaatatgtaccgagaatattctaatcctaaatgggcgccaattgcatatttacaa |
109 |
Q |
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| T |
39727751 |
ataattcttggtaaagaattctgttcaatagttacatatatagctaaatatgtaccgagaatattcta-tcctaaatgggcgccaattgcatatttacaa |
39727849 |
T |
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| Q |
110 |
ctctcccttcaagcaatgtcaatcattccctgcttgcaagatcttgaaaccactttgttggaagtcctcccttagtgaaaacatttgcgaattgaagtcc |
209 |
Q |
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| T |
39727850 |
ctctcccttcaagcaatgtcaatcattccctgcttgcaagatcttgaaaccactttgttggaagtcctcccttagtgaaaacatttgcgaattgaagtcc |
39727949 |
T |
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| Q |
210 |
aaaagaccaggtcactatctaatttctccttgatgaagggtcaatgtatctatatgtatttgattctatcatgcgtgttgggttacatgcattgctaatg |
309 |
Q |
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| T |
39727950 |
aaaagaccaggtcactatctaatttctccttgatgaagggtcaatgtatctatatgtatttgattctatcatgcgtgttgggttacatgcattgctaatg |
39728049 |
T |
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| Q |
310 |
gaagaagtattatcacagacagattagcctcatatgatctttgtactttatttcgaggtcatggagtatgatct |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39728050 |
gaagaagtattatcacagacagattagcctcatatgatctttgtactttatttcgaggtcatggagtatgatct |
39728123 |
T |
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