View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_low_10 (Length: 331)
Name: NF17211_low_10
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 130 - 319
Target Start/End: Original strand, 22327861 - 22328050
Alignment:
| Q |
130 |
ctcgtcgaagagaatcagcagcagcggaggaggaggagaaatcgtggaggtacaaggaggtcacattgtccgttcaacaggacggaaagaccgtcacagt |
229 |
Q |
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| T |
22327861 |
ctcgtcgaagagaatcagcagcagcggaggaggaggagaaatcgtggaggtacaaggaggtcacattgtccgttcaacaggacggaaagaccgtcacagt |
22327960 |
T |
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| Q |
230 |
aaagtttgcaccgcgaaaggtccccgtgaccgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctc |
319 |
Q |
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| T |
22327961 |
aaagtttgcaccgcgaaaggtccccgtgaccgccgtgtacgactctcagcccacactgcgattcaattctacgacgtgcaagatcgtctc |
22328050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 22327749 - 22327790
Alignment:
| Q |
18 |
cattatctttctcttccatcgaatatgcaagaaagatgggag |
59 |
Q |
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| T |
22327749 |
cattatctttctcttccatcgaatatgcaagaaagatgggag |
22327790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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