View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_low_11 (Length: 326)
Name: NF17211_low_11
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 47477366 - 47477060
Alignment:
| Q |
1 |
ttcaccggagtatgtgcgttcaagctgcgaagctagcttgaaacgtctcgatgttgaatacattgatctctattatcagcacagagtcgatacaaccgtg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47477366 |
ttcaccggagtatgtgcgttcaagctgcgaagctagcttgaaacgtctcaatgttgaatacattgatctctattatcagcacagagtcgatacaaccgtg |
47477267 |
T |
|
| Q |
101 |
cctattgaggatacagttaaggatatttcttcctatgtaaaactagtatttgatttgagcatagtacacggcaacacgttacatatacatgttgatatgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
47477266 |
cctattgaggatacagttaaggatatttcttcctatgtaaaactagtatttgatttgagcatagtacacggcaacaagttacatatacatgttgatatgg |
47477167 |
T |
|
| Q |
201 |
ttagattatttgttgagagtctcaaattataaatgggagacacccctacctttataagctggtcttgtagggttgagttattgacaattcaaatttgaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
47477166 |
ttagattatttgttgagagtctcaaattataaatgggagacacccctacctttataaactggtcttgtagggttgagttattgacaattcaaatttgaag |
47477067 |
T |
|
| Q |
301 |
attattt |
307 |
Q |
| |
|
||||||| |
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| T |
47477066 |
attattt |
47477060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 29 - 135
Target Start/End: Complemental strand, 47474004 - 47473898
Alignment:
| Q |
29 |
gaagctagcttgaaacgtctcgatgttgaatacattgatctctattatcagcacagagtcgatacaaccgtgcctattgaggatacagttaaggatattt |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| | ||| ||||||||||||||||||||||||||| |
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| T |
47474004 |
gaagctagcttgaaacgtctcgatgttgaatacattgatctctattatcagcacagaattgatacttctgtgtctattgaggatacagttaaggatattt |
47473905 |
T |
|
| Q |
129 |
cttccta |
135 |
Q |
| |
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||||||| |
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|
| T |
47473904 |
cttccta |
47473898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 47486657 - 47486544
Alignment:
| Q |
1 |
ttcaccggagtatgtgcgttcaagctgcgaagctagcttgaaacgtctcgatgttgaatacattgatctctattatcagcacagagtcgatacaaccgtg |
100 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| | ||| |
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| T |
47486657 |
ttcaccggattatgtgcgttcatgctgcgaagctagcttgaaacgtctcgatgtcgaatacattgatctgtattatcagcacagagtggatacatctgtg |
47486558 |
T |
|
| Q |
101 |
cctattgaggatac |
114 |
Q |
| |
|
||||| |||||||| |
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|
| T |
47486557 |
cctatagaggatac |
47486544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 47473874 - 47473762
Alignment:
| Q |
195 |
atatggttagattatttgttgagagtctcaaattataaatgggagacacccctacctttataagctggtcttgtagggttgagttattgacaattcaaat |
294 |
Q |
| |
|
||||| ||| ||||||||||||||||| ||||||||||||||||||| ||| |||||| |||||||||| || ||||||||||||||||||||||||||| |
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| T |
47473874 |
atatgcttacattatttgttgagagtcccaaattataaatgggagactcccataccttgataagctggttttctagggttgagttattgacaattcaaat |
47473775 |
T |
|
| Q |
295 |
ttgaagattattt |
307 |
Q |
| |
|
||||||||||||| |
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|
| T |
47473774 |
ttgaagattattt |
47473762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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