View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_low_12 (Length: 321)
Name: NF17211_low_12
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_low_12 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 304
Target Start/End: Complemental strand, 18153238 - 18152946
Alignment:
| Q |
12 |
atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa |
111 |
Q |
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| T |
18153238 |
atgaacaggaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaa |
18153139 |
T |
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| Q |
112 |
gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa |
211 |
Q |
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| T |
18153138 |
gagcggaatatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaa |
18153039 |
T |
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| Q |
212 |
atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgagacaaggaggacaacgggtaggcgaaatg |
304 |
Q |
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| T |
18153038 |
atacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg |
18152946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 205 - 304
Target Start/End: Original strand, 1785691 - 1785790
Alignment:
| Q |
205 |
tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgagacaaggaggacaacgggtaggcgaaatg |
304 |
Q |
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| T |
1785691 |
tgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgaaacaaggaggacaacgggtaggcgaaatg |
1785790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 222478 - 222762
Alignment:
| Q |
20 |
gaggcttccagaaaacttgtgttttctgaattatatgaagccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaa |
119 |
Q |
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| T |
222478 |
gaggcttcaagaaaacttgtgttttcagaattatatgaagccagtaaagaaacaaaaaatccatgggtatttgaacccgagtacccgggaaaaagcagaa |
222577 |
T |
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| Q |
120 |
tatttgatggaagaacagggaatctttttgaacagcctgttataataggaaagccttatattttgaaattaattcatcaagttgatgataaaatacatgg |
219 |
Q |
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| T |
222578 |
tatttgatggaagaacaggcgacccctttgagcaacctgttctaatagggaagtcctatatcttaaaattaattcatcaagttgatgagaaaattcatgg |
222677 |
T |
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| Q |
220 |
acgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgagacaaggaggacaacgggtaggcgaaatg |
304 |
Q |
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| T |
222678 |
gcgttctactgggccctactcacttgttacacaacaaccggttagaggaagagccaagcaagggggacaacgagtaggagaaatg |
222762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 94; Significance: 7e-46; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 191 - 304
Target Start/End: Complemental strand, 23937344 - 23937231
Alignment:
| Q |
191 |
attcatcaagttgatgataaaatacatggacgttccagtggacattatgcacttgttacacaacaaccccttaaaggaagggcgagacaaggaggacaac |
290 |
Q |
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| T |
23937344 |
attcatcaagttgatgataaaatacatggacgtttcagtggacattatgcacttgttacacaacaaccccttaaaggaagggtgaaacaaggaggacaac |
23937245 |
T |
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| Q |
291 |
gggtaggcgaaatg |
304 |
Q |
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| T |
23937244 |
tggtaggcaaaatg |
23937231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 162
Target Start/End: Original strand, 47586031 - 47586066
Alignment:
| Q |
127 |
tggaagaacagggaatctttttgaacagcctgttat |
162 |
Q |
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| T |
47586031 |
tggaagaacagggaatctttttgaacagcctgttat |
47586066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 132
Target Start/End: Complemental strand, 22998273 - 22998200
Alignment:
| Q |
59 |
gccagtaaacaaacatcgaatccatggatatttgaacccgagtatccgggaaagagcggaatatttgatggaag |
132 |
Q |
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| T |
22998273 |
gccaataaagaaacatccaatccatgaatatttcagcctaagtatccgggaaaaagcgaaatattttatggaag |
22998200 |
T |
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