View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_low_14 (Length: 319)
Name: NF17211_low_14
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 39645600 - 39645294
Alignment:
| Q |
1 |
ttaaacaaacataaatccctttatatattgagcaaatattaattaataggagtagtttgtactttgtttaatgaattaaagtatctggtctgggtcaaat |
100 |
Q |
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| T |
39645600 |
ttaaacaaacataaatccctttatatattgagcaaatattaattaataggagtagtttgtactttgtttaatgaattaaagtatctggtctcggtcaaat |
39645501 |
T |
|
| Q |
101 |
atgtcagaaaatactttggtatgaagtactaccttcattaatagctcccggtttcatctcattttcatatgtacttggctcaaagttagtcacagcctct |
200 |
Q |
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| T |
39645500 |
atgtcagaaaatactttggtatgaagtactaccttcattaatagctcccggtttcatctcattttcatatgtacttggctcgaagttagtcacagcctct |
39645401 |
T |
|
| Q |
201 |
cttccattgcattttagagctgctttgtcataagccctgatttccagaa--agagaaacatattggttagaatcctaatgagctttgataatttaagtgt |
298 |
Q |
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| T |
39645400 |
cttccattgcattttagagctgctttgtcataagccctgatttccggaaagagagaaacgtattggttagaatcctaatgagctttgataatttaagtgt |
39645301 |
T |
|
| Q |
299 |
aataaat |
305 |
Q |
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||||||| |
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| T |
39645300 |
aataaat |
39645294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 238
Target Start/End: Original strand, 39154741 - 39154814
Alignment:
| Q |
165 |
tcatatgtacttggctcaaagttagtcacagcctctcttccattgcattttagagctgctttgtcataagccct |
238 |
Q |
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| T |
39154741 |
tcatatatgcttggatcaaaattggtgacggcctctttaccattgcattttattgctgctttgtcataagccct |
39154814 |
T |
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