View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17211_low_15 (Length: 309)
Name: NF17211_low_15
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_low_15 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 47 - 292
Target Start/End: Complemental strand, 889560 - 889306
Alignment:
| Q |
47 |
ttttagtataaaaaattgtgtgtat--------atgattcaagggttataccaaaaactgagaaatggggctctagtattaccctaaaatatgtgaagag |
138 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
889560 |
ttttagtataaaaaattgtgtgtatttcattatatgattcaagggttataccaaaaactgagaaatggggctctagtattaccctaaaaaatgtgaagag |
889461 |
T |
|
| Q |
139 |
aaatcaaaaatgggttttttcaaaacnnnnnnn-ttaacaatgtcttgagaggaataaaatggaagnnnnnnntgaagagaggaagcatatagaaattta |
237 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
889460 |
aaatcaaaaatgggttttttcaaaacaaaaaaaattaacaatgtcttgagaggaataaaatggaagaaaaaaatgaagagaggaagcatatagaaattta |
889361 |
T |
|
| Q |
238 |
ggagagagagaaaaacataccatgaaaatggaacaagttattgaatgaaaccctt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
889360 |
ggagagagagaaaaacataccatgaaaatggaacaagttattgaatgaaaccctt |
889306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University