View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17211_low_16 (Length: 308)
Name: NF17211_low_16
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_low_16 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 17 - 287
Target Start/End: Original strand, 1058188 - 1058459
Alignment:
| Q |
17 |
gttagtaaagaaaggaaggatatggaaatggaaggaaatcgtgagaaagaggaaaccctacctcctggatttcgatttcatcctaccgatgaagaactca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1058188 |
gttagtaaagaaaggaaggatatggaaatggaaggaaatcgtgagaaagaggaaaccctacctcctggatttcgatttcatcctaccgatgaagaactca |
1058287 |
T |
|
| Q |
117 |
tcacttactatcttgtaaacaagatttcagattctgtaaattttacatgcaaagcaataggtgatgtagatctcaacaaatgcgagccatgggagcttcc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1058288 |
tcacttactatcttgtaaacaagatttcagattctgtaaattttacatgcaaagcaataggtgatgtagatctcaacaaatgcgagccatgggagcttcc |
1058387 |
T |
|
| Q |
217 |
aggtaaaattttatatatgcatggatc-ttttgtttaattgaagattcacttgactctatttgattttgccc |
287 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1058388 |
aggtaaaattttatatatgcatggatctttttgtttaattgaagattcacttgactctatttgattttgccc |
1058459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 62 - 221
Target Start/End: Complemental strand, 50581010 - 50580854
Alignment:
| Q |
62 |
aaagaggaaaccctacctcctggatttcgatttcatcctaccgatgaagaactcatcacttactatcttgtaaacaagatttcagattctgtaaatttta |
161 |
Q |
| |
|
||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||| ||||||||| | ||||| |
|
|
| T |
50581010 |
aaagaggaaaccctaccaccgggatttcgatttcatcctacagatgaagaactcatcacttgctatctcataaacaagatatcagattct---agtttta |
50580914 |
T |
|
| Q |
162 |
catgcaaagcaataggtgatgtagatctcaacaaatgcgagccatgggagcttccaggta |
221 |
Q |
| |
|
|| ||||||||||| |||| ||||||||||||||| || ||||||||||| ||||||| |
|
|
| T |
50580913 |
caggcaaagcaataactgatatagatctcaacaaatctgaaccatgggagctaccaggta |
50580854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University