View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_low_19 (Length: 286)
Name: NF17211_low_19
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_low_19 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 31963187 - 31963468
Alignment:
| Q |
1 |
tttgttttgtttaaactggtttatcatcattttgaaatgatattaacggatataaagaatgctaataaacttctgttgagaatagaaatgcccgtataga |
100 |
Q |
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| T |
31963187 |
tttgttttgtttaaactggtttatcatcattttgaaatgatattaatggatataaagaatgctaataaacttctgttgagaatagaaatgcccatataga |
31963286 |
T |
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| Q |
101 |
catagatcattctattttatttaaaatatgaaaatcaaaaactaacatgagaagttaagattacctagcaattgaattctacaattggaataaactatga |
200 |
Q |
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| T |
31963287 |
catagatcattctatttta----aaatttgaaaatcaaaaactaacatgagaagttaagattacctagcaattgaattctacaattggaataaactatga |
31963382 |
T |
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| Q |
201 |
attcaacttctaagaggcattggacatatgcttgcttacgatatgaattatgcgttgctgctgaattattctcaacttcgaaagct |
286 |
Q |
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| T |
31963383 |
attcaacttctaagaggcattggatatatgcttgcttacgatatgaattatgcgttgctgctgaattattctcaacttcgaaagct |
31963468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 6 - 272
Target Start/End: Original strand, 31967314 - 31967570
Alignment:
| Q |
6 |
tttgtttaaactggtttatcatcatttt-gaaatgatattaacggatataaagaatgctaataaacttctgttgagaatagaaatgcccgtatagacata |
104 |
Q |
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| T |
31967314 |
tttgattaaactggtttatcatcatttttgaaatgataataatggatataaagaatgctattaaacttctgttgaaaatggaaatgcccttatagacata |
31967413 |
T |
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| Q |
105 |
gatcattctattttatttaaaatatgaaaatcaaaaactaacatgagaagttaagattacctagcaattgaattctacaattggaataaactatgaattc |
204 |
Q |
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| T |
31967414 |
gatcattctatttaa----aaatattaaaa---ataactaacatgagaagttaagattaccttacaattgaattctgcaattgacaaaaactatgaattc |
31967506 |
T |
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| Q |
205 |
aacttctaagaggcattggacatatgcttgcttacgatatgaattatgcgttgctgctgaattattct |
272 |
Q |
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| T |
31967507 |
aacttctaagaggcattggatatatgcttgcttacaatatga-ttatgag---ctgctgaattattct |
31967570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 140 - 272
Target Start/End: Original strand, 31960306 - 31960438
Alignment:
| Q |
140 |
aactaacatgagaagttaagattacctagcaattgaattctacaattggaataaactatgaattcaacttctaagaggcattgg--acatatgcttgctt |
237 |
Q |
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| T |
31960306 |
aactgacatgagaagttaagattatctagaaattgaattctacaattgacataaattatg-gtttaacttctaataggcattggatatatatgcttgctt |
31960404 |
T |
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| Q |
238 |
acgatatgaattatgcgttgctgctgaattattct |
272 |
Q |
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| T |
31960405 |
acaatatg-attatttgatgctgctgaattattct |
31960438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 83
Target Start/End: Original strand, 35587736 - 35587790
Alignment:
| Q |
30 |
ttttgaaatgatattaacggat-ataaagaatgctaataaacttctgttgagaat |
83 |
Q |
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| T |
35587736 |
ttttgaaatgatattattggattataaacactgctaataaacttctgttgagaat |
35587790 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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