View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17211_low_2 (Length: 579)

Name: NF17211_low_2
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17211_low_2
NF17211_low_2
[»] chr2 (4 HSPs)
chr2 (2-335)||(35796100-35796434)
chr2 (185-249)||(20203731-20203795)
chr2 (166-259)||(27464579-27464672)
chr2 (171-244)||(31995139-31995212)
[»] chr5 (10 HSPs)
chr5 (168-259)||(31620910-31621001)
chr5 (159-257)||(3801373-3801471)
chr5 (164-257)||(15933201-15933294)
chr5 (165-257)||(34857386-34857478)
chr5 (165-259)||(27196116-27196210)
chr5 (185-257)||(38522870-38522942)
chr5 (178-259)||(43386768-43386851)
chr5 (164-259)||(31021901-31021996)
chr5 (185-259)||(27876102-27876176)
chr5 (165-259)||(32945028-32945122)
[»] chr4 (17 HSPs)
chr4 (185-257)||(48731182-48731254)
chr4 (185-259)||(9469836-9469910)
chr4 (185-259)||(36543840-36543914)
chr4 (159-259)||(48339106-48339206)
chr4 (159-257)||(19853011-19853109)
chr4 (165-257)||(12673037-12673129)
chr4 (159-259)||(27891420-27891519)
chr4 (159-259)||(36156301-36156401)
chr4 (164-259)||(15697090-15697185)
chr4 (165-244)||(34980526-34980605)
chr4 (189-248)||(39736746-39736805)
chr4 (165-259)||(24007910-24008004)
chr4 (166-259)||(49083241-49083334)
chr4 (159-259)||(11055233-11055333)
chr4 (155-259)||(46944551-46944655)
chr4 (185-257)||(50146927-50146999)
chr4 (191-259)||(56224210-56224278)
[»] scaffold0022 (1 HSPs)
scaffold0022 (164-257)||(124490-124583)
[»] chr7 (16 HSPs)
chr7 (159-259)||(7447914-7448014)
chr7 (164-259)||(20401039-20401134)
chr7 (185-259)||(3942240-3942314)
chr7 (165-259)||(26719859-26719953)
chr7 (185-259)||(35543563-35543637)
chr7 (166-240)||(10096516-10096590)
chr7 (159-257)||(33124733-33124831)
chr7 (165-259)||(33898951-33899045)
chr7 (159-257)||(43052910-43053008)
chr7 (164-257)||(388989-389082)
chr7 (185-258)||(45176309-45176382)
chr7 (159-255)||(10618959-10619055)
chr7 (165-257)||(18250002-18250094)
chr7 (165-257)||(18740227-18740319)
chr7 (198-270)||(31491892-31491964)
chr7 (164-256)||(33140812-33140904)
[»] chr3 (14 HSPs)
chr3 (159-259)||(33438738-33438838)
chr3 (159-259)||(46293220-46293320)
chr3 (185-257)||(19560783-19560855)
chr3 (165-259)||(30662138-30662232)
chr3 (159-249)||(39135387-39135477)
chr3 (164-257)||(25253740-25253833)
chr3 (159-244)||(39469553-39469638)
chr3 (165-257)||(12710741-12710833)
chr3 (165-257)||(26049549-26049641)
chr3 (159-259)||(52199462-52199562)
chr3 (185-260)||(47782127-47782202)
chr3 (159-257)||(9505130-9505228)
chr3 (159-257)||(54393452-54393550)
chr3 (165-257)||(44574565-44574657)
[»] scaffold0260 (1 HSPs)
scaffold0260 (187-257)||(10050-10120)
[»] chr1 (14 HSPs)
chr1 (187-257)||(20347727-20347797)
chr1 (165-257)||(40159639-40159731)
chr1 (165-256)||(5204479-5204570)
chr1 (159-257)||(35810751-35810849)
chr1 (164-257)||(42937112-42937205)
chr1 (165-257)||(28006389-28006481)
chr1 (185-244)||(11991331-11991390)
chr1 (168-259)||(31816610-31816701)
chr1 (166-257)||(44596557-44596648)
chr1 (165-259)||(15257178-15257272)
chr1 (185-257)||(6413298-6413370)
chr1 (159-259)||(12224582-12224682)
chr1 (159-259)||(45581015-45581115)
chr1 (159-259)||(47602869-47602969)
[»] chr8 (4 HSPs)
chr8 (164-257)||(43384832-43384925)
chr8 (166-257)||(39478090-39478181)
chr8 (159-256)||(27189092-27189189)
chr8 (165-257)||(9412533-9412625)
[»] scaffold0204 (1 HSPs)
scaffold0204 (159-259)||(26628-26728)
[»] scaffold0223 (1 HSPs)
scaffold0223 (165-259)||(14465-14559)
[»] chr6 (3 HSPs)
chr6 (159-257)||(10961805-10961903)
chr6 (185-247)||(8596855-8596917)
chr6 (185-257)||(9950769-9950841)
[»] scaffold0171 (1 HSPs)
scaffold0171 (185-259)||(21146-21220)


Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-122; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 2 - 335
Target Start/End: Original strand, 35796100 - 35796434
Alignment:
Q  2 cgaataatatgagaggaaacaacctgaatatctgattaaaaacagttgtgtcaacggttacaaagacgaattgagaccgcaactgtannnnnnnna-ggg 100  Q
    |||| ||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||          |||    
T  35796100 cgaaaaatatgagaggaaacaacctggatacctgattaaaaacagttgtgccaacggttacgaagacgaattgagaccgtaactgtattttttttttggg 35796199  T
Q  101 atcgcaactgcattcttaaacgcctgtaaagcactataggagtctttaaatatgtaaatttctgctcaagttcaacccattagattcatgaaccaaattc 200  Q
    | ||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  35796200 accgcaactgcattcttaaacgcttgtaaagcactagaggagtctttaaatatgtaaatttctgctcaagttcaacccgttagattcatgaaccaagttc 35796299  T
Q  201 aatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtcgggtctaattttaaggacttcggttttgaaattgtttttct 300  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |  | | ||||||||||||||||||    
T  35796300 aatgaatcaactgttgagtcgaatttcaaactatattcgagttgattcgattcattgtcgggcctaatgttaagtaggtggcttttgaaattgtttttct 35796399  T
Q  301 atttcttttcgttagctttgtaaatgagtcattgt 335  Q
    |||||||||||||||||||||||||||||||||||    
T  35796400 atttcttttcgttagctttgtaaatgagtcattgt 35796434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 249
Target Start/End: Complemental strand, 20203795 - 20203731
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcg 249  Q
    |||||||||||| ||||| |||||||||||||| ||||||| | |||| || |||||||| ||||    
T  20203795 ttcatgaaccaagttcaacgaatcaattgttgaatcgaattacgaactttaatcgagttggttcg 20203731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 27464672 - 27464579
Alignment:
Q  166 tcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    |||||||| || |||| | ||||||||||||||||||  |||||||| | || || | | || |||||| ||||||||| |||| |||||||||    
T  27464672 tcaagttcgactcatttggttcatgaaccaaattcaacaaatcaattatcgaatcaagtctcgaactattttcgagttggttcggttcattgtc 27464579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 31995139 - 31995212
Alignment:
Q  171 ttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttg 244  Q
    |||||| |||| |||| |||||||||| ||||  ||| |||  | |||| ||||||||||||||||||||||||    
T  31995139 ttcaactcatttgatttatgaaccaaactcaacaaattaatcatcgagttgaatttcaaactatattcgagttg 31995212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 31620910 - 31621001
Alignment:
Q  168 aagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    ||||||||| |||||| |||||||||||||||||||| |  |||||| |||||||||||| |||||||||| ||||| |||| |||||||||    
T  31620910 aagttcaactcattaggttcatgaaccaaattcaatggactaattgtcgagtcgaatttcgaactatattcaagttggttcggttcattgtc 31621001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 3801471 - 3801373
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||| ||||||||||  | |||| | |||||||||||| ||||||||| ||||||| |||||||||| | |||||||||||||||| |||| |||||||    
T  3801471 tttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattacgaactatattcgagttggttcggttcattg 3801373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 15933201 - 15933294
Alignment:
Q  164 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||| ||||||| |||||| |||||||||||| ||||| |||| || ||| |||||||||||| ||||||| |||||||| |||| |||||||    
T  15933201 gctcatgttcaactcattaggttcatgaaccaagttcaacgaattaactgtcgagtcgaatttcgaactatactcgagttggttcggttcattg 15933294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 34857386 - 34857478
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||| || ||||||||||||||| ||| ||||| ||||||||| |||| | |||| ||| ||||| ||||||||| |||| |||||||    
T  34857386 ctcaagttcgactcattagattcatgaatcaagttcaacgaatcaattattgaattgaatctcacactattttcgagttggttcggttcattg 34857478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 27196116 - 27196210
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    ||||||||| || |||| | ||||||||||||||| || ||||||||| | || |||| | || |||||| ||||||||| |||| |||||||||    
T  27196116 ctcaagttcgactcatttggttcatgaaccaaatttaacgaatcaattatcgaatcgagtctcgaactattttcgagttggttcggttcattgtc 27196210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 38522942 - 38522870
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||||||||||| ||||||| | ||||| | ||||| |||| | |||||||||||||||| |||| |||||||    
T  38522942 ttcatgaaccaagttcaatggaccaattatcgagtcaaattacgaactatattcgagttggttcggttcattg 38522870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 178 - 259
Target Start/End: Original strand, 43386768 - 43386851
Alignment:
Q  178 cattagattcatgaaccaaat--tcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    |||||| |||||||||||| |  |||| | || |||||| || ||||||||||||||||| || |||||||| |||||||||||    
T  43386768 cattaggttcatgaaccaattgttcaacggattaattgtcgaatcgaatttcaaactatactcaagttgatttgattcattgtc 43386851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 31021901 - 31021996
Alignment:
Q  164 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    |||||| |||| | |||| | ||||||||||||| |||| || | |||| | ||||||| || | |||||||||||||||| |||| |||||||||    
T  31021901 gctcaaattcagctcatttggttcatgaaccaaactcaacgagttaattatcgagtcgagttccgaactatattcgagttggttcggttcattgtc 31021996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 27876176 - 27876102
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    ||||||||| || ||||||||||||||||||||||| ||  || |||| | ||| ||||| |||| |||||||||    
T  27876176 ttcatgaacgaagttcaatgaatcaattgttgagtcaaacctcgaactttgttcaagttggttcggttcattgtc 27876102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 32945122 - 32945028
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    ||||||||| || |||| | |||||||||||| || || |||||||||   || |||| |||| |||||| ||||||||| |||| |||||||||    
T  32945122 ctcaagttcgactcatttggttcatgaaccaagtttaacgaatcaattaccgaatcgagtttcgaactattttcgagttggttcggttcattgtc 32945028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 48731254 - 48731182
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||||||||||||||||||| | ||||||| |||||||||||| |||||||||||||||| |||| |||||||    
T  48731254 ttcatgaaccaaattcaatggaccaattgtcgagtcgaatttcgaactatattcgagttggttcggttcattg 48731182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 9469836 - 9469910
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    |||||||||||| ||||||  | ||||||| |||||||||| | |||||||||||||||| |||| |||||||||    
T  9469836 ttcatgaaccaagttcaatagaccaattgtcgagtcgaattacgaactatattcgagttggttcggttcattgtc 9469910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 36543840 - 36543914
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    |||||||||||| ||||||| | ||||||| |||||||||| | |||||||||||||||| |||  |||||||||    
T  36543840 ttcatgaaccaagttcaatggaccaattgtcgagtcgaattacgaactatattcgagttggttcagttcattgtc 36543914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 48339206 - 48339106
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||| |||||||||| || |||| |||||||||||||| |||||  ||||| |||| || ||||||| | |||| || | |||||| |||||||||||||    
T  48339206 tttcagctcaagttcgactcatttgattcatgaaccaagttcaacaaatcagttgtcgaatcgaattacgaactctaattgagttggttcgattcattgt 48339107  T
Q  259 c 259  Q
    |    
T  48339106 c 48339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 19853011 - 19853109
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||| |||||||| || | | |||| |||||||||||| ||||| | || || | | ||||||||| |||||||||| |||||||| ||||||||||||    
T  19853011 tttcagctcaagtccatctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcaaactataatcgagttggttcgattcattg 19853109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 12673129 - 12673037
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||| || |||| | |||||||||||| ||||| || |||||| | || |||||| || |||||| ||||||||| |||| |||||||    
T  12673129 ctcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcattg 12673037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 27891420 - 27891519
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||| ||||||||||| | |||| | |||||||||||| ||||| || | |||||| || |||| || | ||||||  ||||||||||||||||||||||    
T  27891420 tttcagctcaagttcagctcatttg-ttcatgaaccaagttcaacgagttaattgtcgaatcgagttccgaactattgtcgagttgattcgattcattgt 27891518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 36156401 - 36156301
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||| ||||||||||  | |||| | |||| ||||||| ||||| ||||||||||| || ||||||| | |||| || |||||||| |||| ||||||||    
T  36156401 tttcagctcaagttcggctcatttggttcaagaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcattgt 36156302  T
Q  259 c 259  Q
    |    
T  36156301 c 36156301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 164 - 259
Target Start/End: Complemental strand, 15697185 - 15697090
Alignment:
Q  164 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    ||||||||||| |  ||| | |||||||| ||| ||||| ||||||||||| ||||||| | || |||| |||||||||||  ||| |||||||||    
T  15697185 gctcaagttcagcttatttggttcatgaatcaagttcaacgaatcaattgtcgagtcgagtctcgaactttattcgagttgtctcggttcattgtc 15697090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 34980605 - 34980526
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttg 244  Q
    ||||||||| |  |||| |||||||||| ||| ||||||||||||||| | || |||| | ||||||||| |||||||||    
T  34980605 ctcaagttcgattcatttgattcatgaatcaagttcaatgaatcaattatcgaatcgagtctcaaactattttcgagttg 34980526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 189 - 248
Target Start/End: Original strand, 39736746 - 39736805
Alignment:
Q  189 tgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattc 248  Q
    |||||||||||||| ||||||||| | || |||| | ||||||||| |||||||||||||    
T  39736746 tgaaccaaattcaacgaatcaattatcgaatcgagtctcaaactattttcgagttgattc 39736805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 24008004 - 24007910
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    |||||||| ||| | |||| |||||||||||| ||||| ||||||||  |  | |||||| || |||||| ||||||||| ||| ||||||||||    
T  24008004 ctcaagtttaactcgttaggttcatgaaccaagttcaacgaatcaatcatcaaatcgaatctcgaactattttcgagttggttcaattcattgtc 24007910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 259
Target Start/End: Complemental strand, 49083334 - 49083241
Alignment:
Q  166 tcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    ||||||||||| |||||| || ||||||||| |||||   |  |||| | ||||| |||||||||||||  || ||||| ||||||||||||||    
T  49083334 tcaagttcaactcattaggtttatgaaccaagttcaacagactaattatcgagtccaatttcaaactattctcaagttggttcgattcattgtc 49083241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 11055333 - 11055233
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||| ||||||||||| | |||| | |||||||||||| |||||||| | |||| | || |||| || | ||||||  |||||||| |||| ||||||||    
T  11055333 tttccgctcaagttcagctcatttggttcatgaaccaagttcaatgagttaattatcgaatcgagttccgaactattgtcgagttggttcggttcattgt 11055234  T
Q  259 c 259  Q
    |    
T  11055233 c 11055233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 155 - 259
Target Start/End: Complemental strand, 46944655 - 46944551
Alignment:
Q  155 taaatttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattca 254  Q
    ||||||||  ||||||||| || |||| | |||||||||||| ||||| ||  ||||| | || |||||| || |||||| || |||||| |||| ||||    
T  46944655 taaatttcaactcaagttcgactcatttggttcatgaaccaagttcaacgagccaattatcgaatcgaatctcgaactatttttgagttggttcggttca 46944556  T
Q  255 ttgtc 259  Q
    |||||    
T  46944555 ttgtc 46944551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 50146999 - 50146927
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||||||||||| ||||| ||||||||||| || ||||||| | |||| || |||| ||| |||| |||||||    
T  50146999 ttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgaattggttcggttcattg 50146927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 259
Target Start/End: Original strand, 56224210 - 56224278
Alignment:
Q  191 aaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    |||||| ||||| |||| |||||||||||| | |||| |||||| || |||||| |||| |||||||||    
T  56224210 aaccaagttcaacgaattaattgttgagtcaagtttcgaactatgtttgagttggttcggttcattgtc 56224278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 164 - 257
Target Start/End: Complemental strand, 124583 - 124490
Alignment:
Q  164 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||||||||| || |||| | |||||||||||| ||||||| | ||||||| ||||| |||||| |||||||||||||||| |||| |||||||    
T  124583 gctcaagttcgactcatttggttcatgaaccaagttcaatggaccaattgtcgagtcaaatttcgaactatattcgagttggttcggttcattg 124490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 7447914 - 7448014
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||| ||||||||||  | |||| | |||||||||||| ||||||||| ||||||| ||||||||||   |||||||||||||||| |||| ||||||||    
T  7447914 tttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattatgaactatattcgagttggttcggttcattgt 7448013  T
Q  259 c 259  Q
    |    
T  7448014 c 7448014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 259
Target Start/End: Original strand, 20401039 - 20401134
Alignment:
Q  164 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    |||||||||||   || ||| |||||||||||||||||||| |  ||||   |||||||||||| |||||||||||||||| |||| |||||||||    
T  20401039 gctcaagttcagttcagtaggttcatgaaccaaattcaatggactaattaccgagtcgaatttcgaactatattcgagttggttcggttcattgtc 20401134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 3942240 - 3942314
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    |||||||||||| ||||||||||||| ||| || ||||||| | |||| || |||||||| |||| |||||||||    
T  3942240 ttcatgaaccaagttcaatgaatcaactgtcgaatcgaattacgaactttaatcgagttggttcggttcattgtc 3942314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 26719859 - 26719953
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    ||||||||| || |||| | |||||||||||| | ||||||| ||||| | || |||| | || |||||| ||||||||| ||||||||||||||    
T  26719859 ctcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcgattcattgtc 26719953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 35543637 - 35543563
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    |||||||||||| ||||| ||||||||| | || | || | ||||||||| ||||||||| ||||||||||||||    
T  35543637 ttcatgaaccaagttcaacgaatcaattatcgaatggagtctcaaactattttcgagttggttcgattcattgtc 35543563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 10096516 - 10096590
Alignment:
Q  166 tcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcga 240  Q
    ||||||||||| |||| | |||||||||||| ||| |||||  |||||| ||||||| |||| |||||| |||||    
T  10096516 tcaagttcaactcatttggttcatgaaccaagttcgatgaacaaattgtcgagtcgagtttcgaactatgttcga 10096590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 33124733 - 33124831
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||| ||||||||||||  |||| | ||||| |||||| ||||| || | |||||| || |||| |||||||||||  |||||||| |||| |||||||    
T  33124733 tttcagctcaagttcaattcatttggttcataaaccaagttcaacgagttaattgtcgaatcgagtttcaaactattgtcgagttggttcggttcattg 33124831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 33899045 - 33898951
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    ||||||||| || |||| | |||||||||||| | |||||||  |||| | || |||||| || |||||| ||||||||| |||| |||||||||    
T  33899045 ctcaagttcgactcatttggttcatgaaccaagtccaatgaactaattctcgaatcgaatatcgaactattttcgagttggttcggttcattgtc 33898951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 43052910 - 43053008
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||| |||||||| || | |||||| |||||||||||| ||||| | || || | | ||||||||| || ||||||| |||||||| |||| |||||||    
T  43052910 tttcggctcaagtccagctcattaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattg 43053008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 388989 - 389082
Alignment:
Q  164 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||||| | | |||| |||||||||||| ||||| | || || | | |||| |||| || ||||||| ||||||||||||| |||||||    
T  388989 gctcaagttcagctcgttaggttcatgaaccaagttcaacggattaaatatcgagttgaatgtcgaactataatcgagttgattcggttcattg 389082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 45176309 - 45176382
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||||||||||| ||||| | || |||| | ||||||||| |||||||||| |||||||  |||| ||||||||    
T  45176309 ttcatgaaccaagttcaacggattaattatcgagtcgaatgtcaaactataatcgagtttgttcggttcattgt 45176382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 255
Target Start/End: Original strand, 10618959 - 10619055
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcat 255  Q
    |||| ||||||||||| | ||||   |||||||||||| ||||| || | |||||| || |||| || ||||||||  ||||||||||||| |||||    
T  10618959 tttcagctcaagttcagctcatttagttcatgaaccaagttcaacgagttaattgtcgaatcgagttccaaactattgtcgagttgattcggttcat 10619055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 18250094 - 18250002
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||| || |||| | |||||||||||| ||||| ||||||||| | || |||| | |  |||||| ||||||||| |||| |||||||    
T  18250094 ctcaagttcgactcatttggttcatgaaccaagttcaacgaatcaattatcgaatcgagtcttgaactattttcgagttggttcggttcattg 18250002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 18740319 - 18740227
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||| || |||| | |||||||||||| || ||||| |||||| |  | |||||| || |||||| ||||||||| |||| |||||||    
T  18740319 ctcaagttcgactcatttggttcatgaaccaagtttaatgagtcaattatcaaatcgaatctcgaactattttcgagttggttcggttcattg 18740227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 31491892 - 31491964
Alignment:
Q  198 ttcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtcgggtctaattt 270  Q
    ||||| |||| |||| | || |||||| ||||||||| || ||||||||||| ||||||||| | ||||||||    
T  31491892 ttcaacgaattaattatcgaatcgaatctcaaactatttttgagttgattcggttcattgtcagctctaattt 31491964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 164 - 256
Target Start/End: Complemental strand, 33140904 - 33140812
Alignment:
Q  164 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcatt 256  Q
    |||||||||||   ||||  ||||||||||||| ||||| || | ||||||  ||||||||| | |||||| |||||||||| ||| ||||||    
T  33140904 gctcaagttcagttcatttcattcatgaaccaagttcaacgagttaattgtcaagtcgaattccgaactatgttcgagttgactcggttcatt 33140812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 33438838 - 33438738
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||| |||||||||| || |||| | |||||||||||| ||||| ||||||||||| || ||||||| |||||| || |||||||| |||| ||||||||    
T  33438838 tttcagctcaagttcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacaaactttaatcgagttggttcggttcattgt 33438739  T
Q  259 c 259  Q
    |    
T  33438738 c 33438738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 46293320 - 46293220
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||| ||||||||||  | |||| | |||||||||||||||||||  | |||||||  ||||||||||  ||||||||||||||||||||| ||||||||    
T  46293320 tttcagctcaagttcggctcatttggttcatgaaccaaattcaattgaccaattgtcaagtcgaattttgaactatattcgagttgattcggttcattgt 46293221  T
Q  259 c 259  Q
    |    
T  46293220 c 46293220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 19560855 - 19560783
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||||||||||| ||||| |||| |||||| |||||||||| | |||||||||||||||| |||| |||||||    
T  19560855 ttcatgaaccaagttcaacgaattaattgtcgagtcgaattccgaactatattcgagttggttcggttcattg 19560783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 30662232 - 30662138
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    ||||||||| || |||| |||||||||||||| ||||| || |||||| | || |||||| ||||||||| ||||||||| ||||  ||||||||    
T  30662232 ctcaagttcgactcatttgattcatgaaccaagttcaacgagtcaattatcgaatcgaatctcaaactattttcgagttggttcggctcattgtc 30662138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 159 - 249
Target Start/End: Original strand, 39135387 - 39135477
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcg 249  Q
    |||| ||||||||||  | |||| | |||||||||||| ||||||||| ||||||| ||||||||||   |||||||||||||||| ||||    
T  39135387 tttcagctcaagttcggctcatttggttcatgaaccaagttcaatgaaccaattgtcgagtcgaattatgaactatattcgagttggttcg 39135477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 25253740 - 25253833
Alignment:
Q  164 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||||| | |||| | |||||||||||| |||||  | |  ||||| ||||||| || |||||||||||||||||| |||| |||||||    
T  25253740 gctcaagttcagctcatttggttcatgaaccaagttcaacaagtttattgtcgagtcgagttccaaactatattcgagttggttcggttcattg 25253833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 39469638 - 39469553
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttg 244  Q
    |||| ||||||||||  | |||| |||||||||||||| ||||||| | ||||| | || ||||||| | ||||||||||||||||    
T  39469638 tttcagctcaagttcggctcatttgattcatgaaccaagttcaatggaccaattatcgaatcgaattacgaactatattcgagttg 39469553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 12710741 - 12710833
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||| || |||| | |||||||||||| ||||| || |||||| | || |||||| || |||||| ||||||||| |||| |||||||    
T  12710741 ctcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcattg 12710833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 26049641 - 26049549
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||| || |||| |||||||||||||| |||||    |||||| | || |||||| ||||||||| ||||||||| |||| |||||||    
T  26049641 ctcaagttcgactcatttgattcatgaaccaagttcaacaggtcaattatcgaatcgaatctcaaactattttcgagttggttcggttcattg 26049549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 159 - 259
Target Start/End: Original strand, 52199462 - 52199562
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||| ||||||||||| | | || | |||||||||||| ||||| |||| |||||| || |||| |  ||||||||  |||||||| |||||||||||||    
T  52199462 tttcagctcaagttcagctcgtttggttcatgaaccaagttcaacgaattaattgtcgaatcgagtcccaaactattgtcgagttggttcgattcattgt 52199561  T
Q  259 c 259  Q
    |    
T  52199562 c 52199562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 260
Target Start/End: Complemental strand, 47782202 - 47782127
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtcg 260  Q
    ||||||||||||||||||||  |  ||||| ||||||| ||| ||| |||||| ||||||| ||| ||||||||||    
T  47782202 ttcatgaaccaaattcaatgtgttgattgtcgagtcgagtttaaaaatatatttgagttgactcggttcattgtcg 47782127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 9505228 - 9505130
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||| ||||||||||||| |||| | |||||||||||| ||||| || | |||||| || |||| || | ||||||  |||||||| |||| |||||||    
T  9505228 tttcagctcaagttcaactcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgagttccgaactattgtcgagttggttcggttcattg 9505130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 54393550 - 54393452
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||| ||||||||||  | |||| | || ||||||||| ||||| ||||||||||| || ||||||| | |||| || |||||||| |||| |||||||    
T  54393550 tttcagctcaagttcggctcatttggtttatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcattg 54393452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 44574565 - 44574657
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||||||||| | |||||| |||| |||| || ||||| |||| |||||  |||||||  ||| ||||||||||||||||  ||| |||||||    
T  44574565 ctcaagttcagctcattaggttcacgaactaagttcaacgaattaattgccgagtcgagcttcgaactatattcgagttgtctcggttcattg 44574657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0260 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0260
Description:

Target: scaffold0260; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 10050 - 10120
Alignment:
Q  187 catgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||||| ||||||||| |||| |||||| ||||| ||||| |||||||||||||||||||||| |||||||    
T  10050 catgaatcaaattcaacgaattaattgtcgagtcaaattttaaactatattcgagttgattcggttcattg 10120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 20347727 - 20347797
Alignment:
Q  187 catgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||||| ||||||||| |||| |||||| ||||| ||||| |||||||||||||||||||||| |||||||    
T  20347727 catgaatcaaattcaacgaattaattgtcgagtcaaattttaaactatattcgagttgattcggttcattg 20347797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 40159731 - 40159639
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||| || |||| |||||||||||||| | ||||||| ||||| | || |||||| ||||||||| ||||||||| |||| |||||||    
T  40159731 ctcaagttcgactcatttgattcatgaaccaagtccaatgaaccaattatcgaatcgaatatcaaactattttcgagttggttcggttcattg 40159639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 165 - 256
Target Start/End: Complemental strand, 5204570 - 5204479
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcatt 256  Q
    ||||||||| || |||| | |||| ||||||| ||||| || |||||| | || |||||| ||||||||| ||||||||| |||||||||||    
T  5204570 ctcaagttcgactcatttggttcacgaaccaagttcaacgagtcaattatcgaatcgaatctcaaactattttcgagttggttcgattcatt 5204479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 35810751 - 35810849
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||| ||||||||||  | |||| | |||||||||||| ||||| ||||||||||| || ||||||| | |||| || |||||||| |||| |||||||    
T  35810751 tttcagctcaagttcggctcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcgaattacgaactttaatcgagttggttcggttcattg 35810849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 42937112 - 42937205
Alignment:
Q  164 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||||  | |||| |||||||||||||| ||| | |||||||||||||| ||||||| | |||| || |||||||| |||  |||||||    
T  42937112 gctcaagttcggctcatttgattcatgaaccaagttcgacgaatcaattgttgaatcgaattacgaactctaatcgagttggttcagttcattg 42937205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 165 - 257
Target Start/End: Original strand, 28006389 - 28006481
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||| || |||| | |||||||||||| ||||| || |||||| | || |||||| || |||||| ||||||||| |||| |||||||    
T  28006389 ctcaagttcgactcatttggttcatgaaccaagttcaacgagtcaattatcgaatcgaatctcgaactattttcgagttggttcggttcattg 28006481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 185 - 244
Target Start/End: Original strand, 11991331 - 11991390
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttg 244  Q
    ||||||||||| |||||| || | |||||||||||||| || |||||||| |||||||||    
T  11991331 ttcatgaaccatattcaaagagttaattgttgagtcgagttccaaactatgttcgagttg 11991390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 259
Target Start/End: Original strand, 31816610 - 31816701
Alignment:
Q  168 aagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    ||||||||| |||| | |||||||||||| ||||| |||||||||   || | || |||| |||||| ||||||||| |||| |||||||||    
T  31816610 aagttcaactcatttggttcatgaaccaagttcaacgaatcaattaccgaattgagtttcgaactattttcgagttggttcggttcattgtc 31816701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 44596557 - 44596648
Alignment:
Q  166 tcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||| | |||| | |||||||||||||||||| || | |||||| || |||| || ||||||||  |||||||| |||| |||||||    
T  44596557 tcaagttcagctcatttggttcatgaaccaaattcaacgagttaattgtcgaatcgagttccaaactattgtcgagttggttcggttcattg 44596648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 165 - 259
Target Start/End: Complemental strand, 15257272 - 15257178
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    ||||||||| || |||| | |||||||||||| | ||||||| ||||| | || |||| | ||||||||| || |||||| |||| |||||||||    
T  15257272 ctcaagttcgactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcaaactatttttgagttggttcggttcattgtc 15257178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 6413298 - 6413370
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||||||||||  ||||| ||||||||| |  | |||||| || |||||| ||||||||| ||||||||||||    
T  6413298 ttcatgaaccaggttcaacgaatcaattatcaaatcgaatctcgaactattttcgagttggttcgattcattg 6413370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 12224682 - 12224582
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||| ||||||||||  | |||| | |||||||||||| ||||| || | |||||| || ||||||| | ||||||  |||||||| |||| ||||||||    
T  12224682 tttcagctcaagttcggctcatttggttcatgaaccaagttcaacgagttaattgtcgaatcgaattccgaactattgtcgagttggttcggttcattgt 12224583  T
Q  259 c 259  Q
    |    
T  12224582 c 12224582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 45581115 - 45581015
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||| ||||||||||||| |||| | |||||||||||| ||||| ||   |||| | || |||| |||| |||||| ||| ||||| |||| ||||||||    
T  45581115 tttccgctcaagttcaactcatttggttcatgaaccaagttcaacgagataattatcgaatcgagtttcgaactattttcaagttggttcggttcattgt 45581016  T
Q  259 c 259  Q
    |    
T  45581015 c 45581015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 47602969 - 47602869
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||| |||||||| || | | |||| |||||||||||| ||||| | || || | | ||||||||| || ||||||| |||||||| |||| ||||||||    
T  47602969 tttcagctcaagtccagctcgttaggttcatgaaccaagttcaacggattaaatatcgagtcgaatgtcgaactataatcgagttggttcggttcattgt 47602870  T
Q  259 c 259  Q
    |    
T  47602869 c 47602869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 164 - 257
Target Start/End: Original strand, 43384832 - 43384925
Alignment:
Q  164 gctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||||||| |||| | |||||||||||| ||||| |||| |||| | || |||||| || |||||| ||||||||| |||| |||||||    
T  43384832 gctcaagttcaactcatttggttcatgaaccaacttcaacgaattaattatcgaatcgaatctcgaactattttcgagttggttcggttcattg 43384925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 257
Target Start/End: Original strand, 39478090 - 39478181
Alignment:
Q  166 tcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    ||||||||||| |||| | |||||||||||| | ||||||| ||||| | || |||| | || |||||| ||||||||| |||| |||||||    
T  39478090 tcaagttcaactcatttggttcatgaaccaagtccaatgaaccaattatcgaatcgagtatcgaactattttcgagttggttcggttcattg 39478181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 27189189 - 27189092
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcatt 256  Q
    |||| |||||||||| || |||| | |||||||||||| ||| | ||||||||| | || || |||| | |||| || ||||||||||||| ||||||    
T  27189189 tttcagctcaagttcgactcatttggttcatgaaccaagttcgacgaatcaattatcgaatctaattacgaactctaatcgagttgattcggttcatt 27189092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 165 - 257
Target Start/End: Complemental strand, 9412625 - 9412533
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||||||||| | |||| | |||||||||||| ||||| || |  ||||| |||||||  | ||||||||| |||||||| |||| |||||||    
T  9412625 ctcaagttcagctcatttggttcatgaaccaagttcaacgagttcattgtcgagtcgagctccaaactataatcgagttggttcggttcattg 9412533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 26728 - 26628
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgt 258  Q
    |||| |||||||||| || |||| |||||||||||||| |||||  ||||| |||| || ||||||| | |||| || | |||||| |||||||||||||    
T  26728 tttcagctcaagttcgactcatttgattcatgaaccaagttcaacaaatcagttgtcgaatcgaattacgaactctaattgagttggttcgattcattgt 26629  T
Q  259 c 259  Q
    |    
T  26628 c 26628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 259
Target Start/End: Original strand, 14465 - 14559
Alignment:
Q  165 ctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    |||||||||||  |||| | |||||||||||| |||||||||||||||   || |||| |||| |||||| |||| |||| |||| |||||||||    
T  14465 ctcaagttcaaatcatttggttcatgaaccaagttcaatgaatcaattaccgaatcgagtttcgaactattttcgggttggttcggttcattgtc 14559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 10961903 - 10961805
Alignment:
Q  159 tttctgctcaagttcaacccattagattcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||| |||||| ||| || |||| | |||||||||||| ||||| ||||||||||| || || |||| |||||| || |||||||| |||| |||||||    
T  10961903 tttcagctcaaattcgactcatttggttcatgaaccaagttcaacgaatcaattgtcgaatcaaattacaaactttaatcgagttggttcggttcattg 10961805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 247
Target Start/End: Complemental strand, 8596917 - 8596855
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgatt 247  Q
    |||||||| ||||||| | || | |||||| ||||||| |||| |||||||||||||||||||    
T  8596917 ttcatgaatcaaattcgacgagttaattgtcgagtcgagtttcgaactatattcgagttgatt 8596855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 185 - 257
Target Start/End: Complemental strand, 9950841 - 9950769
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattg 257  Q
    |||||||||||| ||| |||||||| |||| || || ||||   |||| || |||||||||||||||||||||    
T  9950841 ttcatgaaccaagttcgatgaatcatttgtcgaatcaaattatgaactttaatcgagttgattcgattcattg 9950769  T

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Target: scaffold0171 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 185 - 259
Target Start/End: Original strand, 21146 - 21220
Alignment:
Q  185 ttcatgaaccaaattcaatgaatcaattgttgagtcgaatttcaaactatattcgagttgattcgattcattgtc 259  Q
    |||||||||||| ||||| ||||||||| | || |||| | || |||||| ||||||||| |||| |||||||||    
T  21146 ttcatgaaccaagttcaacgaatcaattatcgaatcgagtctcgaactattttcgagttggttcggttcattgtc 21220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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