View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_low_22 (Length: 272)
Name: NF17211_low_22
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_low_22 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 4 - 272
Target Start/End: Original strand, 11720437 - 11720711
Alignment:
| Q |
4 |
aagcttcacaatattctaatgctcttttccttcttagggaggatcgatatgttttgtgaatttacnnnnnnnnnn------aaggtatgaaatcaaatgg |
97 |
Q |
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| T |
11720437 |
aagcttcacaatattctaatgctcttttccttcttagggaggatcgatatgttttgtgaatttacttttttttttttttttaaggtatgaaatcaaatgg |
11720536 |
T |
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| Q |
98 |
agtataagaaagtgtaaaatggttgttaaaattaccaccgccaaaaatttatagatttcaatgtataaaacgagtatgcattaaaaaatgccatatcatg |
197 |
Q |
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| T |
11720537 |
agtataagaaagtgtaaaatggttgttaaaattaccaccaccaaaaatttatagatttcaatgtataaaaccagtatgcattaaaaaatgccatatcatg |
11720636 |
T |
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| Q |
198 |
ttttaatggttctttagaatggacaagtttcatgtcacaatgaaggtccaaagagtgtgcaatgggaaccttaga |
272 |
Q |
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| T |
11720637 |
ttttaatggttctttagaatggacaagtttcatgtcacaatgaaggtccaaagagtgtgcaatgggaaccttaga |
11720711 |
T |
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Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 101 - 248
Target Start/End: Original strand, 12213493 - 12213642
Alignment:
| Q |
101 |
ataagaaagtgtaaaatggttgttaaaattaccaccgccaaaaatttatagatttcaatgtataaaacgagtatgcattaaaaaatgccatatcatgttt |
200 |
Q |
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| T |
12213493 |
ataagatagtgtaaaatggttgttaaaattaccaccaccgaacattcatagatttcaatgtataaaactagtatgcattcaaaaacgccatatcatgatt |
12213592 |
T |
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| Q |
201 |
taatggttctttagaatggacaagt--ttcatgtcacaatgaaggtccaa |
248 |
Q |
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| T |
12213593 |
taatggttctttagaatggacaaattgttcatgccacaatgaaggtccaa |
12213642 |
T |
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