View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17211_low_24 (Length: 259)

Name: NF17211_low_24
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17211_low_24
NF17211_low_24
[»] chr2 (1 HSPs)
chr2 (17-249)||(5746599-5746828)
[»] chr1 (3 HSPs)
chr1 (34-106)||(16238818-16238890)
chr1 (34-79)||(12137155-12137201)
chr1 (34-79)||(6521116-6521161)
[»] chr3 (1 HSPs)
chr3 (31-91)||(40413426-40413486)
[»] chr6 (2 HSPs)
chr6 (35-109)||(20694578-20694652)
chr6 (47-104)||(2424550-2424607)
[»] chr8 (1 HSPs)
chr8 (31-104)||(29204634-29204707)


Alignment Details
Target: chr2 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 17 - 249
Target Start/End: Complemental strand, 5746828 - 5746599
Alignment:
Q  17 ataacgttgtgcattcggttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaactttcgctgaaaaatgttgacggtaag 116  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  5746828 ataacgttgtgcagtcggttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaacta---ctgaaaaatgttgacggtaag 5746732  T
Q  117 ttaactctcgattaaggaagcaaagtaattttcttacatgtaatgaatgtagcatgggccttataacccaagcccattagtacaactcccacctttcatt 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5746731 ttaactctcgattaaggaagcaaagtaattttcttacatgtaatgaatgtagcatgggccttataacccaagcccattagtacaactcccacctttcatt 5746632  T
Q  217 tttccattaaaaccactaaacttctaacttcat 249  Q
    |||||||||||||||||||||||||||||||||    
T  5746631 tttccattaaaaccactaaacttctaacttcat 5746599  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 16238818 - 16238890
Alignment:
Q  34 gttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaactttcgctgaaaaatgt 106  Q
    ||||||||||||||||||||| || |||||||||||||| | ||| | | ||||||||  |||||||||||||    
T  16238818 gttcaatcattttttaaatcgagtcaaccaatcttaaaagtctcagcatgagttaactaccgctgaaaaatgt 16238890  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 12137155 - 12137201
Alignment:
Q  34 gttcaatcattttttaaatcgggtt-aaccaatcttaaaaatatcaa 79  Q
    |||||||||||||||||||| |||| |||||||||||||||||||||    
T  12137155 gttcaatcattttttaaatcaggtttaaccaatcttaaaaatatcaa 12137201  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 79
Target Start/End: Original strand, 6521116 - 6521161
Alignment:
Q  34 gttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaa 79  Q
    |||||||||||||||||||||  |||||||||||||||||| ||||    
T  6521116 gttcaatcattttttaaatcgatttaaccaatcttaaaaatgtcaa 6521161  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 91
Target Start/End: Complemental strand, 40413486 - 40413426
Alignment:
Q  31 tcggttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaact 91  Q
    |||||||||||| ||||||| |||||| |||| ||||||||| || |||||||| ||||||    
T  40413486 tcggttcaatcactttttaagtcgggtcaaccgatcttaaaattaccaacgtaatttaact 40413426  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 20694652 - 20694578
Alignment:
Q  35 ttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaactttcgctgaaaaatgttga 109  Q
    |||||||| ||||||| | | || |||||||||||||| |  || ||| |||||||| |||||||||||||||||    
T  20694652 ttcaatcactttttaagttgagtcaaccaatcttaaaagtgccaccgtgagttaactatcgctgaaaaatgttga 20694578  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 2424550 - 2424607
Alignment:
Q  47 ttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaactttcgctgaaaaat 104  Q
    ||||||||| |||||| ||||||||| | | | ||||||||||||| |||||||||||    
T  2424550 ttaaatcggtttaaccgatcttaaaagtgttagcgtaagttaacttccgctgaaaaat 2424607  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 29204634 - 29204707
Alignment:
Q  31 tcggttcaatcattttttaaatcgggttaaccaatcttaaaaatatcaacgtaagttaactttcgctgaaaaat 104  Q
    |||||||||||| ||||||| |||| | |||  ||||||||| |  || ||||||||||||| |||||||||||    
T  29204634 tcggttcaatcactttttaagtcggatcaactgatcttaaaagtgacagcgtaagttaacttacgctgaaaaat 29204707  T

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