View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_low_3 (Length: 532)
Name: NF17211_low_3
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 10 - 515
Target Start/End: Complemental strand, 9555068 - 9554557
Alignment:
| Q |
10 |
attattctctctaggtaatggtgctcctgatttctttgctagtgttgtttctttcacaagttcaaacaatggcgcggtcggtttaaatagcattttgggg |
109 |
Q |
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| T |
9555068 |
attactctctctaggtaatggtgctcctgatttctttgctagtgttgtttctttcacaagttcaaacaatggcgcggtcggtttaaatagcattttgggg |
9554969 |
T |
|
| Q |
110 |
ggtgcattttttgtttccacagctgttttaggcataataagttttatagttagttccaataatgtttcagttgataaagctagtttcattagagatgtca |
209 |
Q |
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| T |
9554968 |
ggtgcattttttgtttccacagctgttttaggcataataagttttatagttagttccaataatgtttcagttgataaagctagtttcattagagatgtca |
9554869 |
T |
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| Q |
210 |
ttttcttccttttctctttgttcattcttcttatcatcatttccatcggaaagattagtctctttggttcaatttgctatctttctatctattttcttta |
309 |
Q |
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| T |
9554868 |
ttttcttccttttctctttgttcattcttcttatcatcatttccatcggaaagattagtctctttggttcaatttgctatctttctatctattttcttta |
9554769 |
T |
|
| Q |
310 |
tgtttgtgccgtctcggccacacatttcatctacgaagttgacaaaaaggaagttgaatcttcatcatcttgtgatgatttagttgaatccggcatacca |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9554768 |
tgtttgtgccgtctcggccacacatttcatctacgaagttgacaaaaaggaagttgaatcttcatcatcttgtgatgatttagttgaatccggcatacca |
9554669 |
T |
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| Q |
410 |
ttattgggttatgccgacgatgatac------tgataatgattctcctcataaatcgattatacaaagtattgaagtaaaagaggagaagaaagaaattt |
503 |
Q |
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| T |
9554668 |
ttattgggttatgccgacgatgatactgatcatgataatgattctcctcagaaaccgattttacaaagtattgaagtaaaagaggagaagaaagaaattt |
9554569 |
T |
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| Q |
504 |
ttagtacctatt |
515 |
Q |
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| T |
9554568 |
ttagtacctatt |
9554557 |
T |
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