View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_low_7 (Length: 389)
Name: NF17211_low_7
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 276; Significance: 1e-154; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 31544219 - 31543844
Alignment:
| Q |
1 |
tttagtacactgttagtgaccaaataagcatgaaaacattgccccaacaatcagttttgtactatttttccatcctcatcattgtca---ttcc---aac |
94 |
Q |
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| T |
31544219 |
tttagtgcactgttagtgactaaataagcatgaaaacattgccccaacaatcagttttgtactatttttccatcctcatcattgtaacggttactataac |
31544120 |
T |
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| Q |
95 |
ttatggagagaaagatgcagattacatgtcccaacttatgaaagcactgaccccaactcccaaaggctggtctagcaacattcactactgcaaatggaac |
194 |
Q |
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| T |
31544119 |
taatggagagaaagatgcagattacatgtcccaacttatgaaagcactgaccccaactcccaaaggctggtctggcaacattcactactgcaaatggaat |
31544020 |
T |
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| Q |
195 |
ggcatcacgtgcgaccaatctaatcaagttgtcactgccatcaagcttccatcaagttcactcacagggacaatccctcagaatttcaactcactcaata |
294 |
Q |
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| T |
31544019 |
ggcatcaggtgtgaccaatctaatcaagttgtcaccgccatcaagcttccatcaagttctctcacagggataatccctgagaatttcaactctctcaata |
31543920 |
T |
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| Q |
295 |
atctcaccgacatcgatcttcataacaactcactgaacggtccttcgcctgatttggctttcctaaacatgctcca |
370 |
Q |
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| T |
31543919 |
atctcacggacatcgatcttcataacaactcactcaacggtcctttgcctgatttggctttcctaaacgtgctcca |
31543844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 199
Target Start/End: Complemental strand, 31535449 - 31535365
Alignment:
| Q |
115 |
attacatgtcccaacttatgaaagcactgaccccaactcccaaaggctggtctagcaacattcactactgcaaatggaacggcat |
199 |
Q |
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| T |
31535449 |
attacatgtccaaacttttgaaagcactaaccccaactccctctaactggtctaacaacactcactactgcagatggaacggcat |
31535365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 350
Target Start/End: Complemental strand, 31535334 - 31535217
Alignment:
| Q |
233 |
catcaagcttccatcaagttcactcacagggacaatccctcagaatttcaactcactcaataatctcaccgacatcgatcttcataacaactcactgaac |
332 |
Q |
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| T |
31535334 |
catcacgcttccatcaagttcactcactggtacactcccttccaacctcaactctctctcttatctaacccacatcgacctccacaacaactcactcacc |
31535235 |
T |
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| Q |
333 |
ggtccttcgcctgatttg |
350 |
Q |
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| T |
31535234 |
ggtactttgcctgatttg |
31535217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 192
Target Start/End: Original strand, 31550579 - 31550656
Alignment:
| Q |
115 |
attacatgtcccaacttatgaaagcactgaccccaactcccaaaggctggtctagcaacattcactactgcaaatgga |
192 |
Q |
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| T |
31550579 |
attatatgtcccaacttttgaaagcattgaccccaactccttctggctggtctaacaacactcatcactgcaattgga |
31550656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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