View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17211_low_8 (Length: 384)

Name: NF17211_low_8
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17211_low_8
NF17211_low_8
[»] chr7 (4 HSPs)
chr7 (135-366)||(8443719-8443946)
chr7 (23-146)||(8443976-8444099)
chr7 (90-146)||(8402020-8402076)
chr7 (273-358)||(8401907-8401991)
[»] scaffold0060 (3 HSPs)
scaffold0060 (202-366)||(67954-68112)
scaffold0060 (135-203)||(67467-67535)
scaffold0060 (94-126)||(66552-66584)
[»] chr1 (3 HSPs)
chr1 (22-63)||(34331937-34331978)
chr1 (23-63)||(28723653-28723693)
chr1 (31-63)||(40612959-40612991)
[»] chr6 (2 HSPs)
chr6 (23-63)||(31536076-31536116)
chr6 (23-63)||(30465970-30466010)
[»] chr3 (3 HSPs)
chr3 (23-65)||(13084359-13084401)
chr3 (23-63)||(383669-383709)
chr3 (31-63)||(44647847-44647879)
[»] chr8 (1 HSPs)
chr8 (23-63)||(37600890-37600930)
[»] chr4 (2 HSPs)
chr4 (23-63)||(16070495-16070535)
chr4 (23-63)||(37625126-37625166)
[»] chr2 (1 HSPs)
chr2 (23-63)||(2654365-2654405)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 135 - 366
Target Start/End: Complemental strand, 8443946 - 8443719
Alignment:
Q  135 aatgtcccacatcggggacttttaaaatatatagagattaagttggctataaaacagcgcatgacattacatgttgaacaagagtattaatgaggttgag 234  Q
    |||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||     
T  8443946 aatgtcccacatcgggaacttttgaaatatagagagattaagttggctataaaacagcgcatgacattacatgttgaacaagagt----atgaggttgaa 8443851  T
Q  235 aacttatttgcttgcaatcaaagagaaatttgggagttaataaactaagaaatacgtttgtttcaaatttatcattca-ttcctttcaataacttctcga 333  Q
    ||||||||||  || ||||| ||||||||||| |||| | |||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||    
T  8443850 aacttatttg-atggaatcagagagaaatttgagagtaactaaactaagaaatacgattgtttcaaatttatcattgatttcctttcaataacttctcga 8443752  T
Q  334 aagcctcatgttgttttctttggagtcactctc 366  Q
    | ||||||||||| |||||||||||| ||||||    
T  8443751 atgcctcatgttggtttctttggagtgactctc 8443719  T

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Target: chr7; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 23 - 146
Target Start/End: Complemental strand, 8444099 - 8443976
Alignment:
Q  23 aattatcttttgtttacatgtgtatttaatttgacttttcaaagatagtttataattaaggaccgatgaggtattaaataaaaggaagtaaacccaattt 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  8444099 aattatcttttgtttacatgtgtatttaatttgacttttcaaagatagtttataattaaggaccgatgaggtattaaataaaaggaagtaaacccaaatt 8444000  T
Q  123 ctatctattaataatgtcccacat 146  Q
    ||||||||||||||||||||||||    
T  8443999 ctatctattaataatgtcccacat 8443976  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 90 - 146
Target Start/End: Complemental strand, 8402076 - 8402020
Alignment:
Q  90 gaggtattaaataaaaggaagtaaacccaatttctatctattaataatgtcccacat 146  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8402076 gaggtattaaataaaaggaagtaaacccaatttctatctattaataatgtcccacat 8402020  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 273 - 358
Target Start/End: Complemental strand, 8401991 - 8401907
Alignment:
Q  273 aataaactaagaaatacgtttgtttcaaatttatcattcattcctttcaat-aacttctcgaaagcctcatgttgttttctttggag 358  Q
    |||||||||||||||| |||||||||||||||||| || |||| ||||||| ||||||| ||| ||||   ||||||||||||||||    
T  8401991 aataaactaagaaatatgtttgtttcaaatttatcgttgattcttttcaataaacttcttgaatgcct--ggttgttttctttggag 8401907  T

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Target: scaffold0060 (Bit Score: 101; Significance: 6e-50; HSPs: 3)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 202 - 366
Target Start/End: Original strand, 67954 - 68112
Alignment:
Q  202 tacatgttgaacaagagtattaatgaggttgagaacttatttgcttgcaatcaaagagaaatttgggagttaataaactaagaaatacgtttgtttcaaa 301  Q
    ||||||||||||||||||||    |||||||||||||||||||  |  |||||||||  ||||||||||| |||||||||||||||||||||||||||||    
T  67954 tacatgttgaacaagagtat----gaggttgagaacttatttggattgaatcaaaga--aatttgggagtaaataaactaagaaatacgtttgtttcaaa 68047  T
Q  302 tttatcattcattcctttcaataacttctcgaaagcctcatgttgttttctttggagtcactctc 366  Q
    ||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||    
T  68048 tttatcattgattccttgcaataacttctcgaacgcctcatgttgttttctttggagtgactctc 68112  T

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Target: scaffold0060; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 67467 - 67535
Alignment:
Q  135 aatgtcccacatcggggacttttaaaatatatagagattaagttggctataaaacagcgcatgacatta 203  Q
    ||||||||||||  ||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  67467 aatgtcccacattcggggcttttgaaatatagagagattaagttggctataaaacagcgcatgacatta 67535  T

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Target: scaffold0060; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Original strand, 66552 - 66584
Alignment:
Q  94 tattaaataaaaggaagtaaacccaatttctat 126  Q
    |||||||||||||||||||||||||| ||||||    
T  66552 tattaaataaaaggaagtaaacccaaattctat 66584  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 34331937 - 34331978
Alignment:
Q  22 gaattatcttttgtttacatgtgtatttaatttgacttttca 63  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
T  34331937 gaattatcttttgtttatatgtgtattaaatttgacttttca 34331978  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 28723693 - 28723653
Alignment:
Q  23 aattatcttttgtttacatgtgtatttaatttgacttttca 63  Q
    |||||||||||||||  ||||||||| ||||||||||||||    
T  28723693 aattatcttttgtttgtatgtgtattaaatttgacttttca 28723653  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 40612991 - 40612959
Alignment:
Q  31 tttgtttacatgtgtatttaatttgacttttca 63  Q
    |||||||| ||||||||||||||||||||||||    
T  40612991 tttgtttaaatgtgtatttaatttgacttttca 40612959  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 31536076 - 31536116
Alignment:
Q  23 aattatcttttgtttacatgtgtatttaatttgacttttca 63  Q
    |||||||||||||||| ||||||||| ||||||||||||||    
T  31536076 aattatcttttgtttatatgtgtattaaatttgacttttca 31536116  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 30466010 - 30465970
Alignment:
Q  23 aattatcttttgtttacatgtgtatttaatttgacttttca 63  Q
    |||||||||||||||  ||||||||| ||||||||||||||    
T  30466010 aattatcttttgtttgtatgtgtattaaatttgacttttca 30465970  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 13084401 - 13084359
Alignment:
Q  23 aattatcttttgtttacatgtgtatttaatttgacttttcaaa 65  Q
    |||||||||||||||  ||||||||| ||||||||||||||||    
T  13084401 aattatcttttgtttgtatgtgtattaaatttgacttttcaaa 13084359  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 383669 - 383709
Alignment:
Q  23 aattatcttttgtttacatgtgtatttaatttgacttttca 63  Q
    ||||||| |||||||| ||||||||||||||| ||||||||    
T  383669 aattatcatttgtttatatgtgtatttaatttaacttttca 383709  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 44647847 - 44647879
Alignment:
Q  31 tttgtttacatgtgtatttaatttgacttttca 63  Q
    |||||||| ||||||||||||||||||||||||    
T  44647847 tttgtttatatgtgtatttaatttgacttttca 44647879  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 37600930 - 37600890
Alignment:
Q  23 aattatcttttgtttacatgtgtatttaatttgacttttca 63  Q
    |||||||||||||||  ||||||||| ||||||||||||||    
T  37600930 aattatcttttgtttgtatgtgtattaaatttgacttttca 37600890  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 16070495 - 16070535
Alignment:
Q  23 aattatcttttgtttacatgtgtatttaatttgacttttca 63  Q
    |||||||||||||||| || |||||| ||||||||||||||    
T  16070495 aattatcttttgtttatatatgtattaaatttgacttttca 16070535  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Complemental strand, 37625166 - 37625126
Alignment:
Q  23 aattatcttttgtttacatgtgtatttaatttgacttttca 63  Q
    ||||||| |||||||| ||||||||| ||||||||||||||    
T  37625166 aattatcatttgtttatatgtgtattaaatttgacttttca 37625126  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 23 - 63
Target Start/End: Original strand, 2654365 - 2654405
Alignment:
Q  23 aattatcttttgtttacatgtgtatttaatttgacttttca 63  Q
    |||| ||||||||||| ||||||||||||||||| ||||||    
T  2654365 aattgtcttttgtttatatgtgtatttaatttgatttttca 2654405  T

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