View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17211_low_9 (Length: 367)
Name: NF17211_low_9
Description: NF17211
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17211_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Original strand, 2171330 - 2171678
Alignment:
| Q |
1 |
taatgtaaaagcttctttttatcacttctagtcaaattgaagtttaaagataaaatcaattttgtgtgacaacaatcaaatgcaggtttggatacatacg |
100 |
Q |
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| T |
2171330 |
taatgtaaaagcttctttttatcacttctagtcaaattgaagtttaaagataaaatcaattttgtgtgacaacaatcaaatgcaggtttggatacatacg |
2171429 |
T |
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| Q |
101 |
ggctacctctttcaataaaccgctcagcaataatagcattctggcattgaaattcaccatatagagggaatctaaaaagaatcaaaaagacatcaaagga |
200 |
Q |
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| T |
2171430 |
ggctacctctttcaataaaccgctcagcaataatagcattctggcattgaaactcaccatatagagggaatctaaaaagaatcaaaaagacatcaaagga |
2171529 |
T |
|
| Q |
201 |
tttaacatagtataagaataaaaatcaaaaccaaacaattaacatatatcaagagagtagtaagaaagaagcattaaattaagatgtgtcatgacatgta |
300 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||| |
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| T |
2171530 |
tttaacatagtataagaatcaaaatcaaaaccaaacaattaacatatatcaagagactagtaagaaagaagcattaaattaagacgtttcatgacatgta |
2171629 |
T |
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| Q |
301 |
gagcataatttatggcagcacatcattaaattaggcttcaagtgattaa |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2171630 |
gagcataatttatggcagcacatcattaaattaggcttcaagtgattaa |
2171678 |
T |
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