View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17212_low_3 (Length: 227)
Name: NF17212_low_3
Description: NF17212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17212_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 44783826 - 44783610
Alignment:
| Q |
1 |
catatggcttatgtttgataggaagagattgagatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaa |
100 |
Q |
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| T |
44783826 |
catatggcttatgtttgataggaagagattgagatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaa |
44783727 |
T |
|
| Q |
101 |
agactggccaagtttttgctcatggacgtcataccacatatctttccattactagtaaaatgtgaaactgagaccagatgagataataggatatgatcta |
200 |
Q |
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| T |
44783726 |
agactggccaagtttttgctcatggacgtcataccacatatctttccattactagtaaaatgtgaaactgagaccagatgagataataggatatgatcta |
44783627 |
T |
|
| Q |
201 |
taatttatgtgcctttg |
217 |
Q |
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|||||||||||| |||| |
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| T |
44783626 |
taatttatgtgcttttg |
44783610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 173
Target Start/End: Complemental strand, 44788439 - 44788285
Alignment:
| Q |
19 |
taggaagagattgagatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttg |
118 |
Q |
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| T |
44788439 |
taggaggagattgagatcgatgctaaagttctacgagcagggaagggtatggctgttgtaagcgtggagttcaggaagaaaaagactggccaaatttttg |
44788340 |
T |
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| Q |
119 |
ctcatggacgtcataccacatatctttccattactagtaaaatgtgaaactgaga |
173 |
Q |
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| T |
44788339 |
ctcagggacgtcataccaaatatatttcctttatcactaaaatgtgaaactgaga |
44788285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 166
Target Start/End: Complemental strand, 44803930 - 44803783
Alignment:
| Q |
19 |
taggaagagattgagatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttg |
118 |
Q |
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| T |
44803930 |
taggaggagattgagattgatgctagggttctacgagtaggaaaggccgtagctgttgtaagcgtggagttgaggaagaaaaagacggaccaagtttttg |
44803831 |
T |
|
| Q |
119 |
ctcatggacgtcataccacatatctttccattactagtaaaatgtgaa |
166 |
Q |
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| T |
44803830 |
ctcaagggcgtcttacaaaatatcttccctttaggagtaaaatgtgaa |
44803783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 44786777 - 44786607
Alignment:
| Q |
4 |
atggcttatgtt-tgataggaagagattgagatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaag |
102 |
Q |
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| T |
44786777 |
atggcttatgtgatgataggaggagattgagatcgatggcagagtcctacgagtaggaaagactatagctgttataagcgtggagttaaggaagaaaaaa |
44786678 |
T |
|
| Q |
103 |
actggccaagtttttgctcatggacgtcataccacatatctttccattactagtaaaatgtgaaactgaga |
173 |
Q |
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||||||||| |||||||||| || |||||||||| |||| | || ||| |||||||||||||||||||| |
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| T |
44786677 |
actggccaaatttttgctcaggggcgtcataccaaatatataccctttatcagtaaaatgtgaaactgaga |
44786607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 22 - 176
Target Start/End: Complemental strand, 44792124 - 44791970
Alignment:
| Q |
22 |
gaagagattgagatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttgctc |
121 |
Q |
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|||||||||||||| || || || ||| ||||| ||||||||| | |||||||||||||| ||||||| | ||||||||||||||| ||||||||||||| |
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| T |
44792124 |
gaagagattgagattgatgctagagttttacgaataggaaaggctgtagctgttgtaagcgtggagttcaagaagaaaaagactggacaagtttttgctc |
44792025 |
T |
|
| Q |
122 |
atggacgtcataccacatatctttccattactagtaaaatgtgaaactgagacca |
176 |
Q |
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| T |
44792024 |
aagggcgtcataccaaatatattccctttgtaagtaaaatgtgaaaccgagacca |
44791970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 45 - 166
Target Start/End: Complemental strand, 44800055 - 44799934
Alignment:
| Q |
45 |
ggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttgctcatggacgtcataccacatatctt |
144 |
Q |
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|||||||||||||||||| | |||||||||||||||| | ||||| |||||||||||||| |||||| |||||||||| || |||||||||| |||||| |
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| T |
44800055 |
ggttctacgagtaggaaatgctatagctgttgtaagcgtagagttcaggaagaaaaagacgggccaaatttttgctcaagggcgtcataccaagtatctt |
44799956 |
T |
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| Q |
145 |
tccattactagtaaaatgtgaa |
166 |
Q |
| |
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|| || ||||||||||||| |
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| T |
44799955 |
ccctttgtcagtaaaatgtgaa |
44799934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 19 - 134
Target Start/End: Complemental strand, 44797022 - 44796907
Alignment:
| Q |
19 |
taggaagagattgagatagaagcaagggttctacgagtaggaaaggttatagctgttgtaagcatggagtttaggaagaaaaagactggccaagtttttg |
118 |
Q |
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||||| ||||||||||| || | ||||||||| || ||||||||| | |||||||| ||||| ||||||| ||||||||||| |||||||||||||||| |
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| T |
44797022 |
taggaggagattgagattgataccagggttctaagactaggaaaggctgtagctgttctaagcgtggagttgaggaagaaaaaaactggccaagtttttg |
44796923 |
T |
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| Q |
119 |
ctcatggacgtcatac |
134 |
Q |
| |
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|||| || |||||||| |
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| T |
44796922 |
ctcaagggcgtcatac |
44796907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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