View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17213_high_3 (Length: 370)
Name: NF17213_high_3
Description: NF17213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17213_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 10 - 169
Target Start/End: Original strand, 41629298 - 41629457
Alignment:
| Q |
10 |
ataattctgatgttgaatgatggagatgggctttcaaatgtaggtgatgatgtatgggtggtgggtgttatacccatatgatgagtataattgagttgtg |
109 |
Q |
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| T |
41629298 |
ataattatgatgttgaatgatggagatgggctttcaaatgtaggtgatgatgtatgggtggtgggtgttatacccatatgatgagtataattgagttgtg |
41629397 |
T |
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| Q |
110 |
aatgatgtgcatgttgataatgatatggacattggacaatattgtaagagcatcatagag |
169 |
Q |
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| T |
41629398 |
aatgatgtgcatgttgataatgatatggacattggacaatattgtaagagcatcatagag |
41629457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 215 - 352
Target Start/End: Original strand, 41629503 - 41629640
Alignment:
| Q |
215 |
tcttctttaccttacatcccaaagaacagaaccgaaatgaatccaacaagctccttccacaaatctcacaaatgtgtgctactcctttcccagattttgg |
314 |
Q |
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| T |
41629503 |
tcttctttaccttacatcccaaagaacagaaccgaaatgaatccaacaagctccttccacaaatctcacaaatgtgtgctactcctttcccagattttgg |
41629602 |
T |
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| Q |
315 |
ttgaggcctaacattcaagaacaaaactctagcactgt |
352 |
Q |
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| T |
41629603 |
ttgaggcctaacattcaagaacaaaactctagcactgt |
41629640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 223 - 350
Target Start/End: Complemental strand, 27097731 - 27097604
Alignment:
| Q |
223 |
accttacatcccaaagaacagaaccgaaatgaatccaacaagctccttccacaaatctcacaaatgtgtgctactcctttcccagattttggttgaggcc |
322 |
Q |
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| T |
27097731 |
accttacatcccaaagaacagaaacgaacttggtctaaaaggcctcttccacaaatctcacaaatgtaaggaactgcttttccagattttggttgaggcc |
27097632 |
T |
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| Q |
323 |
taacattcaagaacaaaactctagcact |
350 |
Q |
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| T |
27097631 |
tctcattcagaaataaaactctagcact |
27097604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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