View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17213_high_5 (Length: 250)
Name: NF17213_high_5
Description: NF17213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17213_high_5 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 241
Target Start/End: Complemental strand, 16384527 - 16384299
Alignment:
| Q |
13 |
atttgttgtcagtacataggttcaaataacattactcttgatgcttttagtattcacatggtgattttacaatttgacaggctaaatacgagaaaatgca |
112 |
Q |
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| T |
16384527 |
atttgttgttagtacataggttcaaataacattactcttgatgcttttagtgttcacatggtgattttacaatttgacaggctaaatacgagaaaatgca |
16384428 |
T |
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| Q |
113 |
gaaaaatatcatgaaatttggaagcaacccaaagaatctttgtatggtgactgatagactttctcggattgaggtacccacatgacttaatgaataatga |
212 |
Q |
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| T |
16384427 |
gaaaaatatccagaaatttggaagcaactcaaagaatctttgtatggtgactgatagactttctcggattgaggtacccacatgacttaacgaataatga |
16384328 |
T |
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| Q |
213 |
ctatatctatataaattatgtagaataat |
241 |
Q |
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| T |
16384327 |
ctatatctatataaattatgtggaataat |
16384299 |
T |
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Target: scaffold0011 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 32 - 191
Target Start/End: Original strand, 14795 - 14954
Alignment:
| Q |
32 |
gttcaaataacattactcttgatgcttttagtattcacatggtgattttacaatttgacaggctaaatacgagaaaatgcagaaaaatatcatgaaattt |
131 |
Q |
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| T |
14795 |
gttcaaataacattactcttaatgtttttagcgttcacatgatgattttacaatttgacaggccaaatacgagaaaatgcaaaaaaatattgacaaattc |
14894 |
T |
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| Q |
132 |
ggaagcaacccaaagaatctttgtatggtgactgatagactttctcggattgaggtaccc |
191 |
Q |
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| T |
14895 |
ggaagcaacctaaagaatctttgtatggtgactgatagaccttctcggatcgaggtaccc |
14954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 270961 - 271002
Alignment:
| Q |
147 |
aatctttgtatggtgactgatagactttctcggattgaggta |
188 |
Q |
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| T |
270961 |
aatcttcgtatggtgactgacagaccttctcggattgaggta |
271002 |
T |
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