View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17213_low_1 (Length: 404)
Name: NF17213_low_1
Description: NF17213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17213_low_1 |
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| [»] chr4 (6 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0158 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 57 - 404
Target Start/End: Complemental strand, 4222798 - 4222443
Alignment:
| Q |
57 |
ttggagaaccgaccaatggcatggagttgcgtcaatatgttgcatctatagttaaagattaatggattaatgaagtgtttgattttga--------ggga |
148 |
Q |
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| T |
4222798 |
ttggagaaccgaccaatggcatggagttgcgtcaatatgttgcatctatagttaaagattaatggattaatgaagtgtttgattttgaactcatgaggga |
4222699 |
T |
|
| Q |
149 |
tgcaccgtccataggagatgaattgcttaatagaatgaaagtgactttacattgtgttgatcctttaccttctgatagacctgaagttaaatacgttttg |
248 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4222698 |
tgcaccgtccataggagatgaattgcttaatagaatgaaattggctttacattgtgttgatcctttaccttctgatagacctaaagttaaatacgttttg |
4222599 |
T |
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| Q |
249 |
tagtaattagaagagaataagttgaagttggagctaaggtttaacaaatgaataaagtgaagtaaagtttgtgttacttgaattagtggagaaaggatga |
348 |
Q |
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| T |
4222598 |
tagtaattagaagagaataagttgaagttggagctaaggtttaacaaatgaataaagtgaagtaaagtttgtgttacttgaattagtggagaaaggatga |
4222499 |
T |
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| Q |
349 |
tacatttaataccccgcatgtaaaaatttagtataagttattttatctttggaatt |
404 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4222498 |
tacatttaataccccgcatgtaaaaatttagtataagttattttatctttggaatt |
4222443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 59 - 264
Target Start/End: Original strand, 3908084 - 3908297
Alignment:
| Q |
59 |
ggagaaccgaccaatggcatggagttgcgtcaatatgttgcatctatagttaaagattaatggattaatgaagtgtttgattt--------tgagggatg |
150 |
Q |
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|||||||| || ||||| ||||| |||| ||||||||||||||| || |||||||| | |||| ||||||||||||||||| ||||||||| |
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| T |
3908084 |
ggagaaccaacaaatggaatggacttgcctcaatatgttgcatccattgttaaagaagagtggacaaatgaagtgtttgatttggaactcatgagggatg |
3908183 |
T |
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| Q |
151 |
caccgtccataggagatgaattgcttaatagaatgaaagtgactttacattgtgttgatcctttaccttctgatagacctgaagttaaatacgttttgta |
250 |
Q |
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||| |||||||||||||| | ||||||| | ||||| | |||| |||||||||||||| | |||||||| ||| ||||| |||||| | |||||| | |
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| T |
3908184 |
gaccaaccataggagatgaacttcttaatacattgaaattagctttgcattgtgttgatccatcaccttctgctaggcctgaggttaaacaagttttgca |
3908283 |
T |
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| Q |
251 |
gtaattagaagaga |
264 |
Q |
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| T |
3908284 |
gcaattagaagaga |
3908297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 239
Target Start/End: Original strand, 3924118 - 3924288
Alignment:
| Q |
77 |
atggagttgcgtcaatatgttgcatctatagttaaagattaatggattaatgaagtgtttgattt--------tgagggatgcaccgtccataggagatg |
168 |
Q |
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||||| |||| ||||||||||||||| || |||||||| |||||| ||||||||||||||||| ||||||||| ||| |||||||||||| |
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| T |
3924118 |
atggacttgcctcaatatgttgcatccattgttaaagaagaatggacaaatgaagtgtttgatttggaactcatgagggatggaccaaccataggagatg |
3924217 |
T |
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| Q |
169 |
aattgcttaatagaatgaaagtgactttacattgtgttgatcctttaccttctgatagacctgaagttaaa |
239 |
Q |
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|| | ||||||| | ||||| | |||| |||||||||||||| | |||||||| ||| |||||||||||| |
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| T |
3924218 |
aacttcttaatacattgaaattagctttgcattgtgttgatccatcaccttctgctaggcctgaagttaaa |
3924288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 1508018 - 1507969
Alignment:
| Q |
355 |
taataccccgcatgtaaaaatttagtataagttattttatctttggaatt |
404 |
Q |
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| T |
1508018 |
taataccccgcatgtaaaaattcagtataagttattttatctttggaatt |
1507969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 4222875 - 4222817
Alignment:
| Q |
1 |
accacaaagaaacctaccatgcacatcgacccatatttacagcttttgttatccttttggaga |
63 |
Q |
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| T |
4222875 |
accacaaagaaacctacca----caacgacccatatttacagcttttgttatccttttggaga |
4222817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 5573509 - 5573558
Alignment:
| Q |
355 |
taataccccgcatgtaaaaatttagtataagttattttatctttggaatt |
404 |
Q |
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| T |
5573509 |
taataccccgcatgtaaaagttcaatatcagttattttatcttttgaatt |
5573558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 19804409 - 19804360
Alignment:
| Q |
355 |
taataccccgcatgtaaaaatttagtataagttattttatctttggaatt |
404 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||| |
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| T |
19804409 |
taataccccgcatgtaaaaattcagtatcagttattttatctttggaatt |
19804360 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 22212505 - 22212456
Alignment:
| Q |
355 |
taataccccgcatgtaaaaatttagtataagttattttatctttggaatt |
404 |
Q |
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||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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| T |
22212505 |
taataccccacatgtaaaaatttagtataagttcttttatctttggaatt |
22212456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0158 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 12289 - 12338
Alignment:
| Q |
355 |
taataccccgcatgtaaaaatttagtataagttattttatctttggaatt |
404 |
Q |
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|||||||||| ||||||||||| ||||| ||||||||||||||||||||| |
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| T |
12289 |
taataccccgtatgtaaaaattcagtatcagttattttatctttggaatt |
12338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 402
Target Start/End: Complemental strand, 5559765 - 5559718
Alignment:
| Q |
355 |
taataccccgcatgtaaaaatttagtataagttattttatctttggaa |
402 |
Q |
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||||| |||||||||||||||| ||||| |||||||||||| |||||| |
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| T |
5559765 |
taataacccgcatgtaaaaattcagtatcagttattttatcattggaa |
5559718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 402
Target Start/End: Original strand, 19357429 - 19357476
Alignment:
| Q |
355 |
taataccccgcatgtaaaaatttagtataagttattttatctttggaa |
402 |
Q |
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||||| |||||||||||||||| ||||| |||||||||||| |||||| |
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| T |
19357429 |
taataacccgcatgtaaaaattcagtatcagttattttatcattggaa |
19357476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 14529022 - 14529072
Alignment:
| Q |
355 |
taataccccgcatgtaaaaattt-agtataagttattttatctttggaatt |
404 |
Q |
| |
|
|||||||||||||||||||| || | ||| ||||||||||||||||||||| |
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| T |
14529022 |
taataccccgcatgtaaaaaattcaatatcagttattttatctttggaatt |
14529072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 355 - 402
Target Start/End: Original strand, 2694207 - 2694254
Alignment:
| Q |
355 |
taataccccgcatgtaaaaatttagtataagttattttatctttggaa |
402 |
Q |
| |
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|||||||||||||||||||||| || || |||||||||||| |||||| |
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| T |
2694207 |
taataccccgcatgtaaaaattcagcatcagttattttatcattggaa |
2694254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 399
Target Start/End: Complemental strand, 28146895 - 28146851
Alignment:
| Q |
355 |
taataccccgcatgtaaaaatttagtataagttattttatctttg |
399 |
Q |
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||||| |||||||||||||||| ||||| |||||||||| ||||| |
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| T |
28146895 |
taatatcccgcatgtaaaaattcagtatcagttattttaactttg |
28146851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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