View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17213_low_10 (Length: 236)

Name: NF17213_low_10
Description: NF17213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17213_low_10
NF17213_low_10
[»] chr4 (13 HSPs)
chr4 (1-221)||(4222055-4222275)
chr4 (1-55)||(13714615-13714669)
chr4 (94-221)||(3823474-3823602)
chr4 (11-55)||(1507748-1507792)
chr4 (1-45)||(5573728-5573772)
chr4 (163-207)||(5648308-5648352)
chr4 (163-207)||(9832354-9832398)
chr4 (163-207)||(20225032-20225076)
chr4 (163-207)||(29207939-29207983)
chr4 (163-207)||(30690217-30690261)
chr4 (163-207)||(47444007-47444051)
chr4 (163-207)||(47528571-47528615)
chr4 (163-207)||(48598866-48598910)
[»] chr6 (5 HSPs)
chr6 (4-55)||(26618844-26618895)
chr6 (4-55)||(26724755-26724806)
chr6 (1-55)||(5129414-5129468)
chr6 (163-207)||(1347012-1347056)
chr6 (163-207)||(1354798-1354842)
[»] chr3 (11 HSPs)
chr3 (1-55)||(14529235-14529288)
chr3 (167-209)||(25517209-25517251)
chr3 (163-212)||(22609837-22609886)
chr3 (163-207)||(15797292-15797336)
chr3 (163-207)||(16735512-16735556)
chr3 (163-207)||(22122958-22123002)
chr3 (163-207)||(26573199-26573243)
chr3 (163-207)||(34771405-34771449)
chr3 (163-207)||(40272853-40272897)
chr3 (163-207)||(47624113-47624157)
chr3 (163-207)||(54484763-54484807)
[»] scaffold0158 (1 HSPs)
scaffold0158 (1-45)||(12509-12553)
[»] chr7 (8 HSPs)
chr7 (1-55)||(19804136-19804189)
chr7 (163-207)||(7879688-7879732)
chr7 (163-207)||(10693114-10693158)
chr7 (163-203)||(18747537-18747577)
chr7 (163-207)||(19265864-19265908)
chr7 (163-207)||(21172050-21172094)
chr7 (163-207)||(42391141-42391185)
chr7 (163-207)||(48735163-48735207)
[»] chr8 (6 HSPs)
chr8 (163-207)||(8897805-8897849)
chr8 (163-212)||(45071314-45071363)
chr8 (163-207)||(12670291-12670335)
chr8 (163-207)||(13160751-13160795)
chr8 (163-207)||(29877144-29877188)
chr8 (163-207)||(36720846-36720890)
[»] chr5 (5 HSPs)
chr5 (163-207)||(7368446-7368490)
chr5 (163-207)||(8170025-8170069)
chr5 (163-207)||(24448940-24448984)
chr5 (163-207)||(32703472-32703516)
chr5 (163-207)||(34154855-34154899)
[»] scaffold0180 (1 HSPs)
scaffold0180 (163-207)||(24174-24218)
[»] scaffold0015 (1 HSPs)
scaffold0015 (163-207)||(48675-48719)
[»] chr2 (9 HSPs)
chr2 (163-207)||(8455357-8455401)
chr2 (163-207)||(9671229-9671273)
chr2 (163-207)||(10546213-10546257)
chr2 (163-207)||(22371104-22371148)
chr2 (163-207)||(23145739-23145783)
chr2 (163-207)||(23397814-23397858)
chr2 (163-207)||(23557529-23557573)
chr2 (163-207)||(24890461-24890505)
chr2 (163-207)||(36871542-36871586)
[»] chr1 (3 HSPs)
chr1 (163-207)||(4349711-4349755)
chr1 (163-207)||(34725139-34725183)
chr1 (163-207)||(35253228-35253272)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 4222275 - 4222055
Alignment:
Q  1 acctaaggatataaataatacaaaacatgaaatttctacactttttctccatcttatgacaaaacatgaaattttagtaaaacaacctcttttgtaaagt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4222275 acctaaggatataaataagacaaaacatgaaatttctacactttttctccatcttatgacaaaacatgaaattttagtaaaacaacctcttttgtaaagt 4222176  T
Q  101 tgttgtcacgttattgaaaggtcacaaattccttagaacaacctcttttgtnnnnnnncaaagtaaggctacgtagaatacacaaattggtgggacccct 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||       |||||||||||| |||||||||||||||||||||||||||||    
T  4222175 tgttgtcacgttattgaaaggtcacaaattccttaaaacaacctcttttgtaaaaaaacaaagtaaggctgcgtagaatacacaaattggtgggacccct 4222076  T
Q  201 tcccggatcttgtgaagtttt 221  Q
    ||||| |||||||||||||||    
T  4222075 tcccgaatcttgtgaagtttt 4222055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 13714669 - 13714615
Alignment:
Q  1 acctaaggatataaataatacaaaacatgaaatttctacactttttctccatctt 55  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13714669 acctaaggatataaataagacaaaacatgaaatttctacactttttctccatctt 13714615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 94 - 221
Target Start/End: Complemental strand, 3823602 - 3823474
Alignment:
Q  94 gtaaagttgttgtcacgttattgaaaggtcacaaattccttagaacaacctcttttgt-nnnnnnncaaagtaaggctacgtagaatacacaaattggtg 192  Q
    |||||||||||||||| | |||||||||| |||||||||||| ||||||||| |||||        ||| |||||||| ||||||||| |  | ||||||    
T  3823602 gtaaagttgttgtcacatgattgaaaggttacaaattccttaaaacaacctcatttgtaaaaaaaacaaggtaaggctgcgtagaataaatcagttggtg 3823503  T
Q  193 ggaccccttcccggatcttgtgaagtttt 221  Q
     ||||||||||||||||||||| ||||||    
T  3823502 cgaccccttcccggatcttgtggagtttt 3823474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 55
Target Start/End: Complemental strand, 1507792 - 1507748
Alignment:
Q  11 ataaataatacaaaacatgaaatttctacactttttctccatctt 55  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  1507792 ataaataagacaaaacatgaaatttctacactttttctccatctt 1507748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 5573728 - 5573772
Alignment:
Q  1 acctaaggatataaataatacaaaacatgaaatttctacactttt 45  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||    
T  5573728 acctaaggatacaaataagacaaaacatgaaatttctacactttt 5573772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 5648308 - 5648352
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  5648308 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 5648352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 9832398 - 9832354
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  9832398 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 9832354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 20225032 - 20225076
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  20225032 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 20225076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 29207983 - 29207939
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  29207983 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 29207939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 30690261 - 30690217
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| | || ||||||| |||||||||||||||||||||||    
T  30690261 gtaaggctgcatacaatacaccaattggtgggaccccttcccgga 30690217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 47444007 - 47444051
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  47444007 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 47444051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 47528615 - 47528571
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  47528615 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 47528571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 48598910 - 48598866
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  48598910 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 48598866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 26618844 - 26618895
Alignment:
Q  4 taaggatataaataatacaaaacatgaaatttctacactttttctccatctt 55  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26618844 taaggatataaataagacaaaacatgaaatttctacactttttctccatctt 26618895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 26724755 - 26724806
Alignment:
Q  4 taaggatataaataatacaaaacatgaaatttctacactttttctccatctt 55  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  26724755 taaggatataaataagacaaaacatgaaatttctacactttttctccatctt 26724806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 5129414 - 5129468
Alignment:
Q  1 acctaaggatataaataatacaaaacatgaaatttctacactttttctccatctt 55  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  5129414 acctaaagatataaataagacaaaacatgaaatttctacactttttctccttctt 5129468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 1347012 - 1347056
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  1347012 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 1347056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 1354842 - 1354798
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  1354842 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 1354798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 14529235 - 14529288
Alignment:
Q  1 acctaaggatataaataatacaaaacatgaaatttctacactttttctccatctt 55  Q
    ||||||||||| |||||| |||||||||||||||||||||| |||||||||||||    
T  14529235 acctaaggatacaaataagacaaaacatgaaatttctacac-ttttctccatctt 14529288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 209
Target Start/End: Complemental strand, 25517251 - 25517209
Alignment:
Q  167 ggctacgtagaatacacaaattggtgggaccccttcccggatc 209  Q
    |||| |||| |||||||||| ||||||||||||||||||||||    
T  25517251 ggctgcgtacaatacacaaaatggtgggaccccttcccggatc 25517209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 22609837 - 22609886
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccggatcttg 212  Q
    |||||||| |||| ||||||| || |||||||||||||||||||| ||||    
T  22609837 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccttg 22609886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 15797292 - 15797336
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  15797292 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 15797336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 16735512 - 16735556
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  16735512 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 16735556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 22123002 - 22122958
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  22123002 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 22122958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 26573199 - 26573243
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| ||||||||||||||| |||||||    
T  26573199 gtaaggctgcgtacaatacaccaattggtgggaccccatcccgga 26573243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 34771449 - 34771405
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  34771449 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 34771405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 40272897 - 40272853
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  40272897 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 40272853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 47624113 - 47624157
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  47624113 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 47624157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 54484763 - 54484807
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  54484763 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 54484807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0158 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 12509 - 12553
Alignment:
Q  1 acctaaggatataaataatacaaaacatgaaatttctacactttt 45  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||    
T  12509 acctaaggatacaaataagacaaaacatgaaatttctacactttt 12553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 19804189 - 19804136
Alignment:
Q  1 acctaaggatataaataatacaaaacatgaaatttctacactttttctccatctt 55  Q
    ||||||||||| |||||| |||||||||||||||||||| | |||||||||||||    
T  19804189 acctaaggatacaaataagacaaaacatgaaatttctac-ccttttctccatctt 19804136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 7879688 - 7879732
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  7879688 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 7879732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 10693158 - 10693114
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  10693158 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 10693114  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 18747537 - 18747577
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcc 203  Q
    |||||||| |||| ||||||| |||||||||||||||||||    
T  18747537 gtaaggctgcgtataatacaccaattggtgggaccccttcc 18747577  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 19265864 - 19265908
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  19265864 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 19265908  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 21172094 - 21172050
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  21172094 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 21172050  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 42391185 - 42391141
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  42391185 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 42391141  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 48735207 - 48735163
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  48735207 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 48735163  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 8897849 - 8897805
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||    
T  8897849 gtaaggctacgtacaatacaccaaatggtgggaccccttcccgga 8897805  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 212
Target Start/End: Original strand, 45071314 - 45071363
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccggatcttg 212  Q
    |||||||| |||| ||||||| || |||||||||||||||||||| ||||    
T  45071314 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccggaccttg 45071363  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 12670335 - 12670291
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  12670335 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 12670291  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 13160751 - 13160795
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  13160751 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 13160795  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 29877144 - 29877188
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  29877144 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 29877188  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 36720846 - 36720890
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  36720846 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 36720890  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 7368446 - 7368490
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| |||||||||||||||||||||||    
T  7368446 gtaaggctgcgtacaatacaccaattggtgggaccccttcccgga 7368490  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 8170069 - 8170025
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  8170069 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 8170025  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 24448940 - 24448984
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  24448940 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 24448984  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 32703472 - 32703516
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  32703472 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 32703516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 34154899 - 34154855
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  34154899 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 34154855  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 24218 - 24174
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  24218 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 24174  T

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Target: scaffold0015 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 48719 - 48675
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  48719 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 48675  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 8455401 - 8455357
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  8455401 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 8455357  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 9671229 - 9671273
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  9671229 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 9671273  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 10546213 - 10546257
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  10546213 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 10546257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 22371104 - 22371148
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  22371104 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 22371148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 23145783 - 23145739
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| |||||||||||||| ||||||||    
T  23145783 gtaaggctgcgtacaatacaccaattggtgggaccctttcccgga 23145739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 23397814 - 23397858
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    ||||||||||||| ||||||| || ||||||||||||||| ||||    
T  23397814 gtaaggctacgtacaatacaccaaatggtgggaccccttctcgga 23397858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 23557573 - 23557529
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| |||||||||||||| ||||||||    
T  23557573 gtaaggctgcgtacaatacaccaattggtgggaccctttcccgga 23557529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 24890461 - 24890505
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| | || ||||||| |||||||||||||||||||||||    
T  24890461 gtaaggctgcatacaatacaccaattggtgggaccccttcccgga 24890505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 36871542 - 36871586
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  36871542 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 36871586  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Original strand, 4349711 - 4349755
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  4349711 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 4349755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 34725183 - 34725139
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  34725183 gtaaggctgcgtacaatacactaaatggtgggaccccttcccgga 34725139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 207
Target Start/End: Complemental strand, 35253272 - 35253228
Alignment:
Q  163 gtaaggctacgtagaatacacaaattggtgggaccccttcccgga 207  Q
    |||||||| |||| ||||||| || ||||||||||||||||||||    
T  35253272 gtaaggctgcgtacaatacaccaaatggtgggaccccttcccgga 35253228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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