View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17213_low_4 (Length: 361)
Name: NF17213_low_4
Description: NF17213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17213_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 7309247 - 7309589
Alignment:
| Q |
19 |
tagttttcccacaaccaggtggtccgtgcagcaaaattcccgtcaatggttccaaacctaactttttacccaactcagggtaacacagtaaattaagagg |
118 |
Q |
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| T |
7309247 |
tagttttcccacaaccaggtggtccgtgcagcaaaattcccgtcaatggttccaaacctaactttttacccaactcagggtaacacagtaaattaagagg |
7309346 |
T |
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| Q |
119 |
cacttccaattccttctttatcttctccatcctattccctgctaaatccttaaacatcggccctttcttaacatcaccactgcggccaacaccggaggct |
218 |
Q |
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| T |
7309347 |
cacttccaattccttctttatcttctccatcctattccctgctaaatccttaaacatcggccctttcttaacatcaccactgctgccaacaccggaggct |
7309446 |
T |
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| Q |
219 |
gcattagggatcgaacttttccttaaaacatccggttcctctacttttttgatgtagttctcggaatcataattagaggaagctccagtgcccattcttc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7309447 |
gcattagggatcgaacttttccttaaaacatccggttcctctacttttttgatgtagttctcggaatcataattagaggaagctccagtgcccattcttc |
7309546 |
T |
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| Q |
319 |
catatctcattcttccaagatcatcatcatcagcatcagcatc |
361 |
Q |
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| T |
7309547 |
catatctcattcttccaagatcatcagcatcagcatcatcatc |
7309589 |
T |
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