View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17213_low_7 (Length: 244)
Name: NF17213_low_7
Description: NF17213
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17213_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 141 - 230
Target Start/End: Original strand, 16384802 - 16384889
Alignment:
| Q |
141 |
atagacagaaagtgcacaaacatgtaccaccaacacaatctagtaagccagtgtacgaaatcgaaacctaaaaattgtgagacatttttc |
230 |
Q |
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| T |
16384802 |
atagacagaaagtgcacaaacatgtaccaccaacacaatctagtaagcca--gtacgaaatcgaaacctacaaattgtgacacatttttc |
16384889 |
T |
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Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 16384663 - 16384718
Alignment:
| Q |
1 |
aaggtaaaatgggagcaaatggaggaggaggaccacctgctaacccaagatagatt |
56 |
Q |
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| T |
16384663 |
aaggtaaaatgggagcaaatggaggaggaggaccacctgctaacccaagatagatt |
16384718 |
T |
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