View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17214_low_3 (Length: 566)
Name: NF17214_low_3
Description: NF17214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17214_low_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 506; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 22 - 555
Target Start/End: Complemental strand, 38707920 - 38707388
Alignment:
| Q |
22 |
agtctaatcatatgattttcatcagcaaagagttattgagcaagagccttagcaagttctgttttaccaacaccatttggaccaaggaataggaagggac |
121 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
38707920 |
agtctaatcatatgattttcatcagcaaagagttattgagcaagagccttagcaagttctgttttaccaacactatttggaccaaggaataggaagggac |
38707821 |
T |
|
| Q |
122 |
cagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgca |
221 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38707820 |
cagttggtttttgaggtcttcttaaaccaactctc-gatctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgca |
38707722 |
T |
|
| Q |
222 |
atttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtctgg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38707721 |
atttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtctgg |
38707622 |
T |
|
| Q |
322 |
tccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaagattttttattgcattttccaccttttcaagatcataccac |
421 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38707621 |
tccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaagattttttattgcattttccaccttttcaagatcataccac |
38707522 |
T |
|
| Q |
422 |
ctctcagcctcctgtagtgcaaagaggagctcttcacgtatgtttcagccttcgaatctcatcaatcctctctttctctttgttatactgcatcttcaga |
521 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38707521 |
ctctcagcctcctgtagtgcaaagaggagctcttcacgtatgtttcagccttcaaatctcatcaatcctctctttctctttgttatactgcatcttcaga |
38707422 |
T |
|
| Q |
522 |
tgttgaagtttgtctcttaaattttcaagttctt |
555 |
Q |
| |
|
||| |||| ||||||||||||||||||||||||| |
|
|
| T |
38707421 |
tgtcgaagcttgtctcttaaattttcaagttctt |
38707388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 19 - 410
Target Start/End: Complemental strand, 10046131 - 10045741
Alignment:
| Q |
19 |
tcaagtctaatcatatgattttcatcagcaaagagttattgagcaagagccttagcaagttctgttttaccaacaccatttggaccaaggaataggaagg |
118 |
Q |
| |
|
|||||||||| ||| |||||||||| | ||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
10046131 |
tcaagtctaaccatctgattttcattatcaaagagttgttgagcaagagccttagcaagttctgttttaccgacaccagttggaccaaggaataggaagg |
10046032 |
T |
|
| Q |
119 |
gaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgt |
218 |
Q |
| |
|
||||||||||||||| ||||||| || |||| ||||| || || |||||||||||||| | | |||||||||||||||||||||||||||||||| | | |
|
|
| T |
10046031 |
aaccagttggttgttgtggtcttcctagaccagctctc-gaccttactacagccccagcgacagctttaactgcttggtcttgtcccacaactctagtat |
10045933 |
T |
|
| Q |
219 |
gcaatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtc |
318 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||||||||||||| ||| || || || |
|
|
| T |
10045932 |
gcaatctgtctccaagtccaaccaacctttctttatcattttggcctaaacgagtcactggtataccggtccatcggctaacaacctcagcaatttgatc |
10045833 |
T |
|
| Q |
319 |
tggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaagattttttattgcattttccaccttttcaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10045832 |
tggtccaacagtttctgtcagcatcaagttctcacctttgttcccatcagtgctaccttcaagattttttattgcattttccacctcttcaa |
10045741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 410 - 555
Target Start/End: Complemental strand, 10045708 - 10045561
Alignment:
| Q |
410 |
agatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtat--gtttcagccttcgaatctcatcaatcctctctttctctttgttat |
507 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
10045708 |
agatcataccgcctctcagcctcttgtagtgcaaagaggagctcttcacgtttctgtttcagacttcgaatctcatcaatcctctctttctctttgatat |
10045609 |
T |
|
| Q |
508 |
actgcatcttcagatgttgaagtttgtctcttaaattttcaagttctt |
555 |
Q |
| |
|
||| |||||||||| | ||||| |||||||||||||| |||||||||| |
|
|
| T |
10045608 |
acttcatcttcagaggctgaagcttgtctcttaaattgtcaagttctt |
10045561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 8e-84; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 61 - 410
Target Start/End: Complemental strand, 45467942 - 45467594
Alignment:
| Q |
61 |
gcaagagccttagcaagttctgttttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgaggtcttcttaaaccaactctcagat |
160 |
Q |
| |
|
||||||||||| ||||| || ||||||||||||||| | ||||||||||||| ||||| ||||||||||||||| ||||||| ||||||| |||| ||| |
|
|
| T |
45467942 |
gcaagagcctttgcaagctcagttttaccaacaccagtcggaccaaggaataagaaggaaccagttggttgttggggtcttcctaaaccagctctt-gat |
45467844 |
T |
|
| Q |
161 |
ctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcatttt |
260 |
Q |
| |
|
|||| ||||||| |||||| | | ||||| ||||||||||||||||| |||||| |||||| | ||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
45467843 |
ctcaatacagcctcagcaacagcattaaccgcttggtcttgtcccacgactctagtgtgcagtctgtcaccaagtccaaccaaccttgctttctcatttt |
45467744 |
T |
|
| Q |
261 |
gcactagacgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaagttatcatctttgtt |
360 |
Q |
| |
|
| | || | |||||| ||| |||| ||||||||||||||||||| ||||| ||||| |||||||| ||||| |||| ||| ||||| ||||| |||| |
|
|
| T |
45467743 |
ggccgagcctagtcactggtataccagtccatcggctaacaacctcggctatttggtccggtccaactgtttccgtcaacattaagttctcatccgtgtt |
45467644 |
T |
|
| Q |
361 |
tccatcagtgctaccttcaagattttttattgcattttccaccttttcaa |
410 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
45467643 |
cccatcagtgctaccttcaagatttttaattgcagtttccacctcttcaa |
45467594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 410 - 538
Target Start/End: Complemental strand, 45467561 - 45467431
Alignment:
| Q |
410 |
agatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgt--ttcagccttcgaatctcatcaatcctctctttctctttgttat |
507 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
45467561 |
agatcataccgcctctctgcctcctgtagtgcaaagaggagctcttcacgtttctgcttcagccttcgaatctcatcaatcctctctttctctttactat |
45467462 |
T |
|
| Q |
508 |
actgcatcttcagatgttgaagtttgtctct |
538 |
Q |
| |
|
||| |||||||||| ||||||| |||||||| |
|
|
| T |
45467461 |
acttcatcttcagaggttgaagcttgtctct |
45467431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 34 - 346
Target Start/End: Original strand, 42449918 - 42450229
Alignment:
| Q |
34 |
tgattttcatcagcaaagagttattgagcaagagccttagcaagttctgttttaccaacaccatttggaccaaggaataggaagggaccagttggttgtt |
133 |
Q |
| |
|
|||||||||||| |||| |||| | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| |||| |
|
|
| T |
42449918 |
tgattttcatcatcaaatagttgctcagcaagagccttagcaagttctgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgtt |
42450017 |
T |
|
| Q |
134 |
gaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaa |
233 |
Q |
| |
|
||||||||| ||||||||||||| | |||| ||||| ||||| | || ||||| || ||||||||||| ||||| |||| || ||||||||| |
|
|
| T |
42450018 |
gaggtcttcctaaaccaactctccg-cctcaatacagtgttagcaacggcatttactgcatgatcttgtcccactactcttttgtgtaacctgtcaccaa |
42450116 |
T |
|
| Q |
234 |
gtccaaccaacctttctttatcattttgcact-agacgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtctggtccaacagttt |
332 |
Q |
| |
|
|||||| ||||||||||| ||||||| |||| || || | ||| ||| |||| ||| || ||||||||||| | |||| |||||||| ||||||||| |
|
|
| T |
42450117 |
gtccaagaaacctttctttctcatttt-cactaagtcgggacactggtatacccgtcaataggctaacaaccaaacctattaggtctggttcaacagttt |
42450215 |
T |
|
| Q |
333 |
ctgtcagcatcaag |
346 |
Q |
| |
|
||||| ||||||| |
|
|
| T |
42450216 |
ttgtcaacatcaag |
42450229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 37 - 260
Target Start/End: Original strand, 742665 - 742887
Alignment:
| Q |
37 |
ttttcatcagcaaagagttattgagcaagagccttagcaagttctgttttaccaacaccatttggaccaaggaataggaagggaccagttggttgttgag |
136 |
Q |
| |
|
||||||||| ||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
742665 |
ttttcatcatcaaagagttgttcagcaagagctttagcaagttctgttttaccaacaccagttggaccaaggaataggaaggaaccaattggatgttgag |
742764 |
T |
|
| Q |
137 |
gtcttcttaaaccaactctcagatctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtc |
236 |
Q |
| |
|
|||||| | ||||| ||||| | || | |||||| ||||| | || |||||||| |||||||||||||||||| | ||||| ||||||||| || |
|
|
| T |
742765 |
gtcttcctgaaccagctctc-caccttaatacagcgttagcaacgtcatttactgcttgatcttgtcccacaactctattatgcaacctgtcaccaattc |
742863 |
T |
|
| Q |
237 |
caaccaacctttctttatcatttt |
260 |
Q |
| |
|
||| ||||||||||| ||||||| |
|
|
| T |
742864 |
caagaaacctttctttctcatttt |
742887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 412 - 502
Target Start/End: Original strand, 42450316 - 42450408
Alignment:
| Q |
412 |
atcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgt--ttcagccttcgaatctcatcaatcctctctttctcttt |
502 |
Q |
| |
|
||||| || |||||||||||||||||| | |||| |||||||||||| | | ||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
42450316 |
atcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagcctttgaatctcatcaatcctcactttctcttt |
42450408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 1e-36; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 35 - 259
Target Start/End: Original strand, 43064693 - 43064913
Alignment:
| Q |
35 |
gattttcatcagcaaagagttattgagcaagagccttagcaagttctgttttaccaacaccatttggaccaaggaataggaagggaccagttggttgttg |
134 |
Q |
| |
|
||||||||||| ||| |||| || ||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
43064693 |
gattttcatcatcaagaagttgttctgcaagagccattgcaagttcagttttaccaacaccaattggaccaaggaataggaagggacatgttggttgttg |
43064792 |
T |
|
| Q |
135 |
aggtcttcttaaaccaactctcagatctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaatttgtcaccaag |
234 |
Q |
| |
|
|| ||||| ||||||| |||| ||||||| ||||||| |||||| ||| |||| || ||||| |||||| ||||| ||||||||| | |||| ||| |
|
|
| T |
43064793 |
agctcttcctaaaccagctct-tgatctcaatacagcctcagcaagaacattaattgtttggtattgtcctgcaact---ctgtgcaatctatcacaaag |
43064888 |
T |
|
| Q |
235 |
tccaaccaacctttctttatcattt |
259 |
Q |
| |
|
||||| ||| |||||||| |||||| |
|
|
| T |
43064889 |
tccaatcaatctttctttctcattt |
43064913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 35 - 110
Target Start/End: Complemental strand, 43065154 - 43065079
Alignment:
| Q |
35 |
gattttcatcagcaaagagttattgagcaagagccttagcaagttctgttttaccaacaccatttggaccaaggaa |
110 |
Q |
| |
|
||||||||||| |||| |||| || |||||||||| |||||| | ||||||||||||||| |||||| |||||| |
|
|
| T |
43065154 |
gattttcatcatcaaaaagttgttccacaagagcctttgcaagtccagttttaccaacaccagttggacaaaggaa |
43065079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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