View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17214_low_5 (Length: 287)
Name: NF17214_low_5
Description: NF17214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17214_low_5 |
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| [»] scaffold0458 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 11 - 270
Target Start/End: Original strand, 44464857 - 44465116
Alignment:
| Q |
11 |
cataggtcaaaaaatatccatcactagaaacagatttatttggagctgcagcaatagcatcattaatcgtggtaaagtttccacttccatcttgactaac |
110 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44464857 |
catagatcaaaaaatatccatcactagaaacagatttatttggagctgcagcaatagcatcattaatcgtggtaaagtttccacttccatcttgactaac |
44464956 |
T |
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| Q |
111 |
cgtcacaatatctctcaccacaacatcctctccaacttgattactctgaagaagctttctccgactaactgactcataaatcgcgcgtgttttgctcgtc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44464957 |
cgtcacaatatctctcaccacaacatcctctccaacttgattactctgaagaagctttctccgactaactgactcataaatcgcgcgtgttttgctcgtc |
44465056 |
T |
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| Q |
211 |
atcttaagcggcaaacgcccgtttttaaatcctttgttggagtgtttggaattaggaaac |
270 |
Q |
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| T |
44465057 |
atcttaagcggcaaacgcccgtttttaaatcctttgttggagtgtttggaattaggaaac |
44465116 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 110
Target Start/End: Original strand, 44489274 - 44489338
Alignment:
| Q |
46 |
ttatttggagctgcagcaatagcatcattaatcgtggtaaagtttccacttccatcttgactaac |
110 |
Q |
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| T |
44489274 |
ttatttggagcagcagcaacagcatcattgatagttgtaaagtttccactcccatcttgactaac |
44489338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 44476110 - 44476165
Alignment:
| Q |
64 |
atagcatcattaatcgtggtaaagtttccacttccatcttgactaaccgtcacaat |
119 |
Q |
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| T |
44476110 |
atagcatcattaattgttgtaaaatttccacttccatcttgattaacaatcacaat |
44476165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 25 - 110
Target Start/End: Original strand, 24061826 - 24061911
Alignment:
| Q |
25 |
tatccatcactagaaacagatttatttggagctgcagcaatagcatcattaatcgtggtaaagtttccacttccatcttgactaac |
110 |
Q |
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| T |
24061826 |
tatccatcactagcaaccgtgttatttggtgcagcagctattgcatcattgatagtggtgaagtttccacttccatcttgactaac |
24061911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 39450439 - 39450329
Alignment:
| Q |
25 |
tatccatcactagaaacagatttatttggagctgcagcaatagcatcattaatcgtggtaaagtttccacttccatcttgactaaccgtcacaatatctc |
124 |
Q |
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||||||||||||| ||| | |||||||| || ||||| | || ||||| || | |||||||||||||||||||||||||||||| |||| ||| | |
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| T |
39450439 |
tatccatcactagcaaccgtgttatttggtgcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaacatcac |
39450340 |
T |
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| Q |
125 |
tcaccacaaca |
135 |
Q |
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||||||||||| |
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| T |
39450339 |
tcaccacaaca |
39450329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 135
Target Start/End: Complemental strand, 39471311 - 39471201
Alignment:
| Q |
25 |
tatccatcactagaaacagatttatttggagctgcagcaatagcatcattaatcgtggtaaagtttccacttccatcttgactaaccgtcacaatatctc |
124 |
Q |
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||||||||||||| ||| | |||||||| || ||||| | || ||||| || | |||||||||||||||||||||||||||||| |||| ||| | |
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| T |
39471311 |
tatccatcactagcaaccgtgttatttggtgcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaacatcac |
39471212 |
T |
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| Q |
125 |
tcaccacaaca |
135 |
Q |
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| T |
39471211 |
tcaccacaaca |
39471201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0458 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0458
Description:
Target: scaffold0458; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 135
Target Start/End: Original strand, 3182 - 3292
Alignment:
| Q |
25 |
tatccatcactagaaacagatttatttggagctgcagcaatagcatcattaatcgtggtaaagtttccacttccatcttgactaaccgtcacaatatctc |
124 |
Q |
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||||||||||||| ||| | |||||||| || ||||| | || ||||| || | |||||||||||||||||||||||||||||| |||| ||| | |
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| T |
3182 |
tatccatcactagcaaccgtgttatttggtgcagcagctacggcgtcattgattgcggtaaagtttccacttccatcttgactaacaacgacaacatcac |
3281 |
T |
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| Q |
125 |
tcaccacaaca |
135 |
Q |
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| T |
3282 |
tcaccacaaca |
3292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 19475265 - 19475227
Alignment:
| Q |
64 |
atagcatcattaatcgtggtaaagtttccacttccatct |
102 |
Q |
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|||||||||||||| ||| |||||||||||||||||||| |
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| T |
19475265 |
atagcatcattaatagtgctaaagtttccacttccatct |
19475227 |
T |
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