View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17214_low_8 (Length: 249)
Name: NF17214_low_8
Description: NF17214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17214_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 240
Target Start/End: Original strand, 16995968 - 16996196
Alignment:
| Q |
7 |
atggcataaggagacaagcaaaactactcaccggaagaataaaataaaacaacaacccttnnnnnnncttcccaaccaaacaccccatatcccacaacca |
106 |
Q |
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| T |
16995968 |
atggcatatggagacaagcaaaactaatcactggaagaataaaataaaacaacaacccataaaaaa-cttcccaaccaaacaccccatatcccacaacca |
16996066 |
T |
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| Q |
107 |
aactcatagggtnnnnnnncattagggaccacatacaccaaggatagtgatggagccaaaaataaaacatagttgatcaatcccccaacttcaatagatc |
206 |
Q |
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| T |
16996067 |
aactcagggtaaaaaaaaacattagggaccagc-acaccaagaataaagatggagccaaaaataaatcatag---atcaatcccccaacttcaatagatc |
16996162 |
T |
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| Q |
207 |
aaatccatttgtgacacctacacatctccctatg |
240 |
Q |
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|||||||||||||||||| ||||||||||||||| |
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| T |
16996163 |
aaatccatttgtgacacccacacatctccctatg |
16996196 |
T |
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