View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17214_low_9 (Length: 245)
Name: NF17214_low_9
Description: NF17214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17214_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 17 - 191
Target Start/End: Complemental strand, 246578 - 246403
Alignment:
| Q |
17 |
ttcttcaatttttaagagattaggtacactgggttttaaaaaccctaagaatgtgcaacattgttgtaattgtggcagaccaaaaccaagaaggtc-nnn |
115 |
Q |
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| T |
246578 |
ttcttcaatttttaagagattaggtacactgggttttaaaaaccctaagaatgtgcaacattgttgtaattgtggcagaccaaaaccaagaaggtcaaaa |
246479 |
T |
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| Q |
116 |
nnnncgttggtttcataagcctagacgtgttttcattgtagttactgtttgttcaggtgtttcattattgtatttt |
191 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
246478 |
aaaacgttggtttcataagcctagacgtgttttcattgtagttactgtttgttcaggtgtttcattattgtatttt |
246403 |
T |
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 21960452 - 21960410
Alignment:
| Q |
184 |
tgtattttggaaatatggaaactattccttacacgaagcgaac |
226 |
Q |
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| T |
21960452 |
tgtattttgggaatatggaaactgttccttatacgaagcgaac |
21960410 |
T |
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