View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17215_high_10 (Length: 590)
Name: NF17215_high_10
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 20 - 586
Target Start/End: Complemental strand, 44436889 - 44436321
Alignment:
| Q |
20 |
ctctcctcactggagttcttagagataaatatttttcaagaagcggctttttggaggacaacctcgatctgttacacatagacaagtatttggagtattg |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
44436889 |
ctctcctcactggagttcttagagataaatatttttcaagaagcggctttttggaggacaacctcgatctgttacacatagagaagtatttggagtattg |
44436790 |
T |
|
| Q |
120 |
tatcgccgttgtcctttagatatacgtgggaaattggtgaaggaaatggtatcaggtcagacccttggatctggttaacacagtatatgcagcctactgc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
44436789 |
tatcgccgttgtcctttagatatacgtgggaaattggtgaaggaaatggcatcaggtcagacccttggatctggtcaacgcagtatatgcagcctactgc |
44436690 |
T |
|
| Q |
220 |
cccgagtgtgttatgtgtcatgggagttttgatgataagttgcacactttccttgaatgctctcgttttgttaattgttagaaggaattgcatatgtgga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44436689 |
cccgagtgtgttatgtgtcatgggagttttgatgataagttgcacactttccttgaatgctctcgttttgttaattgttagaaggaattgcatatgtgga |
44436590 |
T |
|
| Q |
320 |
ctataatcaagcatcactttaccggtaggcaatttttgttttcccatcattttatctattgtgcaggccttg--gtggtgagaaaaaatcacgcttctaa |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44436589 |
ctataatcaagcatcactttaccggtaggcaatttttgttttcccatcattttatctattgtgcaggccttggtgtggtgagaaaaaatcacgcttctaa |
44436490 |
T |
|
| Q |
418 |
tctagcctttgaagtatactgttacgcagctgctttaggaggcttcaaatgttagtatggcaaaaagatatatagaggaaaatcaatagagatgtatgta |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44436489 |
tctagcctttgaagtatactgttacgcagctgctttaggaggcttcaaatgttagtatggcaaaaagatatatagaggaaaatcaatagagatgtatgta |
44436390 |
T |
|
| Q |
518 |
gaattgtggtagagcatcatcctcatagaagatgacattcgcagcaaaaaatacgttcctatgcttctc |
586 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44436389 |
gaattgtggtagagcatcttcctcatagaagatgacattcgcagcaaaaaatacgttcctatgtttctc |
44436321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University