View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_high_11 (Length: 529)
Name: NF17215_high_11
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 424; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 49 - 512
Target Start/End: Original strand, 55013334 - 55013796
Alignment:
| Q |
49 |
ctctctttaggagttaggacatgtcggtgtaatggatgaagtcacgatgcaccgttttacataagctttatagtttttgtcaaaattaccgtgatttttc |
148 |
Q |
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| T |
55013334 |
ctctctttaggagttaggacatgtcggtgtaatggatgaagtcacgatgcaccgttttacataagctatatagtttttgtcaaaattactgtgatttttc |
55013433 |
T |
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| Q |
149 |
aaacatattgagaatccaagtatgcactattccatttattatatagtatcttcctacaagtttaacttgtgagaatcgacttgtgaacatttagcttatt |
248 |
Q |
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| T |
55013434 |
aaacatattgagaatccaagcatgcactattccatttattatacagtatcttcctacaagtttaacttgtgagaatcgacttgtgaacatttagcttatt |
55013533 |
T |
|
| Q |
249 |
ttgtgttttgtcgcattgaagtgtatatatgatataaaatgacgatcgatgacaactctgtctctaactgacaatttgtttaagtgactgaattaattaa |
348 |
Q |
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| T |
55013534 |
ttgtgttttgtcgcattgaagtgtatagatgatataaaatgacgatcgatgacaactctgtctctaactgacaatttgtttaagtgactgaattaatt-a |
55013632 |
T |
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| Q |
349 |
aagtaattcactaattcattcacgtgatcccgacacataatggaagtgttagattaattgcatctcgagaattttttgggctgaaatatgattatgcttc |
448 |
Q |
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| T |
55013633 |
aagtaattcactaattcattcacgtgatcccgacacataatggaagtgttagattaattgcatctcgagaattttttgcgctgaaatatgattatgcttc |
55013732 |
T |
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| Q |
449 |
aatgaacatcgaattatataggaaattgttttaattaaatctgtgaacaatactcaccagttac |
512 |
Q |
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| T |
55013733 |
aatcaacatcgaattatataggaaattgttttaatgaaatctgtgaacaatactcaccagttac |
55013796 |
T |
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