View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_high_17 (Length: 438)
Name: NF17215_high_17
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Original strand, 48221828 - 48222236
Alignment:
| Q |
17 |
cattggtgttcctattttgcttctattgaatagaaagaaccaccatattctacaaaagtttggattagtaggactgttgactttatatcatgctttgaag |
116 |
Q |
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| T |
48221828 |
cattggtgttcctattttgcctctattgaatagaaagaaccaccatattccacaaaagtttggattagtaggactgttgactttatatcatgctttgaag |
48221927 |
T |
|
| Q |
117 |
tacttactctcattttcattatgagctgtgtcattagannnnnnnnaccatctttcttatgattcatgatagcattggcatatatgtaggactgttgatt |
216 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||| || ||||| |
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| T |
48221928 |
tacttactctcattttcattatgagctgtgccattagattttttttaccatctttcttatgattcatgatagcattggcat---tgtgccacc--tgatt |
48222022 |
T |
|
| Q |
217 |
gatattgcctttgctatgtatttgtgggtaaattctttgggacatatatcatt-cccttttagagagaaagtcaaacttaatataattcaactggattag |
315 |
Q |
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||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48222023 |
gatattgccttcgctatgaatttgtgggtaaattctttgggacatatatcatttcccttttagagagaaagtcaaacttaatataattcaactggattag |
48222122 |
T |
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| Q |
316 |
agatcttcggccttaagagttattggtgacggcatgaggatgctggatttgagctcctagatcaagtaagaatgtgccacatatgtgaatcttttaggga |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48222123 |
agatcttcggccttaagagttattggtgacggcatgaggatgctggatttgagctcctagatcaagtaagaatgtgccacatatgtgaatcttttaggga |
48222222 |
T |
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| Q |
416 |
aagagtgtgatctg |
429 |
Q |
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| T |
48222223 |
aagagtgtgatctg |
48222236 |
T |
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