View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17215_high_21 (Length: 412)
Name: NF17215_high_21
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_21 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Original strand, 42805244 - 42805624
Alignment:
| Q |
16 |
ctttgaaccatttgatgtcatcgtttggtttatagtatatttttaacttttcaaatttagttagtttttgaaattgtagtgatcgattagcttgatatct |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
42805244 |
ctttgaaccatttgatgtcatcgtttggtttatagtatatttttaacttttcaaatttagttagtttttgaaattgtagtgatcgattagtttgatatct |
42805343 |
T |
|
| Q |
116 |
cacattaaagagattaatcaattcttcaagattaatgaaaatgaaaatcaaaatacatttcacactagttttgcgggacactttaaaaactaagtatgca |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42805344 |
cacattaaagagattaatcaattcttcaagattaatgtaaatgaaaatgaaaatacatttcacactagttttgcgggacactttaaaaactaagtatgca |
42805443 |
T |
|
| Q |
216 |
tgtgtttggttctacggttgtacaaataaattttaaaacaactgattaggtaaaatagattcttatcaaaagtatgttaagtaacaaattgtttgacaac |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42805444 |
tgtgtttggttctacggttgtacaaataaattttaaaacaactgattaggtaaaatagattctgatcaaaagtatgttaagtaacaaattgtttgacaac |
42805543 |
T |
|
| Q |
316 |
ttagttatttaaagcaccttcaccacttaggctcgacactcaagagttgtgtttagtacccaatattttatgatccaaata |
396 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
42805544 |
ttagtcatttaaagcaccttcaccatttaggctcgacactcaagagttgtgtttaatacccaatattttatgatccaaata |
42805624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University