View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_high_23 (Length: 403)
Name: NF17215_high_23
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 385
Target Start/End: Complemental strand, 50423450 - 50423069
Alignment:
| Q |
8 |
agattaccttcacctcctccacaaactccactcttaagtctaaactaaggcacaataagttctattcatgataatttcacaagatcacacaatcaaatac |
107 |
Q |
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| T |
50423450 |
agattaccttggcctcctccacaaactccactcttaagtctaaactaaggcacaataagttctattcacgataatttcacaagatcacacaatcaaatac |
50423351 |
T |
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| Q |
108 |
acatttcacataacattcaataattataattgtcacggtatagataaacactaataataatacgtcgttgcacgttgcaatacattgtttcttgtatttg |
207 |
Q |
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| T |
50423350 |
acatttcacataacattcaataattataattgtcacggtatagataaacactaataataatacgtcattgcacgttgcaatacattgtttcttgtatttg |
50423251 |
T |
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| Q |
208 |
tacattttaaatttttgcatatgttccttttag----tgnnnnnnnnnncttttcaatctattactatattatatcgcctcctctaaaacaaccacagtt |
303 |
Q |
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| T |
50423250 |
tacattttaaatttttgcatatgttccttttagtgtttgttttttttttcttttcaatctattactatattatatcgcctcctctaaaacaaccacagtt |
50423151 |
T |
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| Q |
304 |
ttagaaaccgacatattaatcagtccaattagaaccgatgatatttacagataaattgactggttggattgtctacactatg |
385 |
Q |
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| T |
50423150 |
ttagaaaccgacatattaatcagtccaattagaaccaatgatatttacagataaatcgactggttggattgtctacactatg |
50423069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 78 - 129
Target Start/End: Complemental strand, 14425825 - 14425772
Alignment:
| Q |
78 |
ataatttcacaagatcacacaatcaaatacacat--ttcacataacattcaata |
129 |
Q |
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| T |
14425825 |
ataatttcacaagatcacacaattaaatacatatacttcacataatattcaata |
14425772 |
T |
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