View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_high_25 (Length: 393)
Name: NF17215_high_25
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_25 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 390
Target Start/End: Original strand, 38533097 - 38533469
Alignment:
| Q |
18 |
atctcctcctaccgcaaggaacctatgtgttcaccttctaaagcttttctacgtggaaacaaagcatgcaagcttgcgcttgagaatttacccgatgagg |
117 |
Q |
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| T |
38533097 |
atctcctcctaccgcaaggaacctatgtgttcaccttctaaagcttttctacgtggaaacaaagcatgcaagcttgcgcttgagaatttacccgatgagg |
38533196 |
T |
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| Q |
118 |
tttacgatacggagtgggatcttattatgatcgatgcgccgaaagggtatttcgcggaggcgccggggagaatggcggcggtgttttcagctgctgttat |
217 |
Q |
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| T |
38533197 |
tttacgatacggagtgggatcttattatgatcgatgcgccgaaagggtatttcgcggaggcgccggggagaatggcggcggtgttttcagctgctgttat |
38533296 |
T |
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| Q |
218 |
ggcgaggaataggaagggatctggtgtgacgcatgtgtttttgcatgatgtggatcgtagggttgagaaactttatgctgatgagtttctttgtaagaag |
317 |
Q |
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| T |
38533297 |
ggcgaggaataggaagggatctggtgtgacgcatgtgtttttgcatgatgtggatcgtagggttgagaaactttatgctgatgagtttctttgtaagaag |
38533396 |
T |
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| Q |
318 |
aatttggttaaaggtgttggaaggctttggcattttcagatagcaccgtttaatggcacaggttctgctcgtt |
390 |
Q |
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| T |
38533397 |
aatttggttaaaggtgttggaaggctttggcattttcagatagcaccgtttaatggcactgattctcctcgtt |
38533469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 111 - 349
Target Start/End: Complemental strand, 34715272 - 34715034
Alignment:
| Q |
111 |
gatgaggtttacgatacggagtgggatcttattatgatcgatgcgccgaaagggtatttcgcggaggcgccggggagaatggcggcggtgttttcagctg |
210 |
Q |
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| T |
34715272 |
gatgagatttacgaaacggagtgggatttgataatgatcgatgcgccgagaggttatttcgcggaggcgccggggagaatggcggcgatattttcaatga |
34715173 |
T |
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| Q |
211 |
ctgttatggcgaggaataggaagggatctggtgtgacgcatgtgtttttgcatgatgtggatcgtagggttgagaaactttatgctgatgagtttctttg |
310 |
Q |
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| T |
34715172 |
cggtgatggcgagaaatagaaaaggttccggtgtgacgcacgtgtttttgcatgatgtggatcggaaggttgagaaagtttatgccgaagaatttctttg |
34715073 |
T |
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| Q |
311 |
taagaagaatttggttaaaggtgttggaaggctttggca |
349 |
Q |
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| T |
34715072 |
taggaagaatttggtgaaaggtgttggtaggctttggca |
34715034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 240 - 305
Target Start/End: Original strand, 10189258 - 10189323
Alignment:
| Q |
240 |
ggtgtgacgcatgtgtttttgcatgatgtggatcgtagggttgagaaactttatgctgatgagttt |
305 |
Q |
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|||||||||||||||||| | |||||||||||| | ||||||||||||||||||| | |||||| |
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| T |
10189258 |
ggtgtgacgcatgtgtttcttcatgatgtggatagggaggttgagaaactttatgctaaggagttt |
10189323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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