View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17215_high_26 (Length: 384)
Name: NF17215_high_26
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_26 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 27083424 - 27083790
Alignment:
| Q |
1 |
tgaccggttgtttatttcttttaacagctatatacatgttaaacggtaaaacataaatcacgaaacaatcaaataaccgagtatatgcatgtttggtttg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
27083424 |
tgaccggttgtttatttcttttatcagctatatacatgttaaacggtaaaacataaatcacgaaacaattaaataaccgagtatatgcatgtttgctttg |
27083523 |
T |
|
| Q |
101 |
agtgtgaatttgacagagctgcgggttacattgtgattttgacgaaagctataatttaagtgagtgtttggaaaaatgctaagtcatgttcataattttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27083524 |
agtgtgaatttgacagagctgcgggttacactgtgattttgacgaaagctataatttaagtgagtgtttggaaaaatgctaagtcatgttcataattttg |
27083623 |
T |
|
| Q |
201 |
gttgtctaaaccctctaatcactagcttctgaaaaaaccaaaatgtgtctagggacgcaatattgtcactcttgccaaaccaatcacaggataaagtttc |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27083624 |
gttgtccaaaccctctaatcactagcttctgaaaaaaccaaaatgtgtttagggacgcaatattttcactcttgccaaaccaatcacaggataaagtttc |
27083723 |
T |
|
| Q |
301 |
aacaaacgcacaatgccaccgtaattttgtcaaaaattgtccttccaaacatataatatgtagggtc |
367 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27083724 |
aacaaacgcacaatgccgccgtaattttgtcaaaaattgtccttccaaacatataatatgtagggtc |
27083790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 27194877 - 27194511
Alignment:
| Q |
1 |
tgaccggttgtttatttcttttaacagctatatacatgttaaacggtaaaacataaatcacgaaacaatcaaataaccgagtatatgcatgtttggtttg |
100 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
27194877 |
tgaccggttgtttatttcttttatcagctatatacatgttaaacggtaaaacataaatcacgaaacaattaaataaccgagtatatgcatgtttgctttg |
27194778 |
T |
|
| Q |
101 |
agtgtgaatttgacagagctgcgggttacattgtgattttgacgaaagctataatttaagtgagtgtttggaaaaatgctaagtcatgttcataattttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27194777 |
agtgtgaatttgacagagctgcgggttacactgtgattttgacgaaagctataatttaagtgagtgtttggaaaaatgctaagtcatgttcataattttg |
27194678 |
T |
|
| Q |
201 |
gttgtctaaaccctctaatcactagcttctgaaaaaaccaaaatgtgtctagggacgcaatattgtcactcttgccaaaccaatcacaggataaagtttc |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27194677 |
gttgtccaaaccctctaatcactagcttctgaaaaaaccaaaatgtgtttagggacgcaatattttcactcttgccaaaccaatcacaggataaagtttc |
27194578 |
T |
|
| Q |
301 |
aacaaacgcacaatgccaccgtaattttgtcaaaaattgtccttccaaacatataatatgtagggtc |
367 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27194577 |
aacaaacgcacaatgccgccgtaattttgtcaaaaattgtccttccaaacatataatatgtagggtc |
27194511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University