View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_high_27 (Length: 383)
Name: NF17215_high_27
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_27 |
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Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 15 - 371
Target Start/End: Complemental strand, 22908618 - 22908256
Alignment:
| Q |
15 |
acacatgagtctcaaatacaaaacgggctttcttaacttggacaaaagttgatctacaatctagaaagatggatggctccataagtttccattagatgtt |
114 |
Q |
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| T |
22908618 |
acacatgagtctcaaatacaaaacgggctttcttaacttggacaaaagttgatctacaatctagaaagatggatggctccataagtttccattagatgtt |
22908519 |
T |
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| Q |
115 |
tccccatagaaaaaccatatgtatttactttgatccaaaacgttagatggaatccaaaaataaagttatgatgttcggaggttttcatggtttaggaagc |
214 |
Q |
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| T |
22908518 |
tccccatagaagaaccatatgtatttactttgatccaaaatgttagaaggaatccaaaaataaagttatgatgttcggaggttttcatggtttaggaagc |
22908419 |
T |
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| Q |
215 |
actttaaactcgctgctaatagtttgctcagcaggaatggccagaaaatgttgag---------ttgttacttggttgcacaactgctaaaaccttagat |
305 |
Q |
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| T |
22908418 |
actttaaattaactgctaatagtttgctcagaaggaatgaccagaaaatgttgagttcataagcttgttacattgttgcacagctgctaaaaccttagat |
22908319 |
T |
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| Q |
306 |
atgaccctagaagcgtaggccttgctgccattcttaaatctgatatgccagatgatatgagtaatg |
371 |
Q |
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| T |
22908318 |
atgactctagaagcgtaggcct---tgccattcttaaatctgatatgccagatgatatgagtaatg |
22908256 |
T |
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