View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17215_high_41 (Length: 281)

Name: NF17215_high_41
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17215_high_41
NF17215_high_41
[»] chr3 (5 HSPs)
chr3 (16-265)||(8332858-8333105)
chr3 (92-172)||(8341395-8341479)
chr3 (16-84)||(8341950-8342018)
chr3 (26-79)||(26727551-26727604)
chr3 (205-265)||(8341306-8341366)
[»] chr2 (4 HSPs)
chr2 (104-242)||(29229172-29229315)
chr2 (104-242)||(29342472-29342615)
chr2 (29-81)||(29228597-29228649)
chr2 (29-81)||(29341896-29341948)
[»] chr1 (3 HSPs)
chr1 (26-78)||(44785757-44785809)
chr1 (29-77)||(44612085-44612133)
chr1 (34-81)||(44144872-44144919)
[»] scaffold0061 (1 HSPs)
scaffold0061 (29-81)||(29864-29916)
[»] scaffold0017 (1 HSPs)
scaffold0017 (29-81)||(168876-168928)
[»] chr5 (9 HSPs)
chr5 (26-66)||(29507656-29507696)
chr5 (26-66)||(29507728-29507768)
chr5 (28-66)||(29507874-29507912)
chr5 (28-66)||(29507946-29507984)
chr5 (28-66)||(29508090-29508128)
chr5 (25-63)||(29508159-29508197)
chr5 (26-66)||(29507584-29507624)
chr5 (26-66)||(29507800-29507840)
chr5 (26-66)||(29508016-29508056)


Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 8333105 - 8332858
Alignment:
Q  16 atcatcaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctcttaagagttatacaaacatacacacatatag 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||  |||||||||||    
T  8333105 atcattaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatctttccctcttaagagttatacaaaca--cacacatatag 8333008  T
Q  116 aaaattgtgtttaaggaatgtgtattttcctgcttccttcttatcttaaacctgtaattttatcgtccatccatttaatgttcaaatcttattcactaac 215  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||| ||||    
T  8333007 aaaattgtgtttaaggaaggtgtattttcctgcttccttcttatcttaaacctgtaattttatcgtccatccatttaatgttcaaattatattcattaac 8332908  T
Q  216 aaagatattcttttgtcttgtatgaaggnnnnnnnctagagaaattttgt 265  Q
    ||||||| ||||||||||| ||||||||       |||||||||||||||    
T  8332907 aaagataatcttttgtcttatatgaaggaaaaaaactagagaaattttgt 8332858  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 8341479 - 8341395
Alignment:
Q  92 ttatacaaacatacacacatata----gaaaattgtgtttaaggaatgtgtattttcctgcttccttcttatcttaaacctgtaa 172  Q
    ||||||||||| |||||||||||    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8341479 ttatacaaacacacacacatatatatagaaaattgtgtttaaggaaggtgtattttcctgcttccttcttatcttaaacctgtaa 8341395  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 8342018 - 8341950
Alignment:
Q  16 atcatcaagtctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttcccctc 84  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8342018 atcattaagactgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatctttccctc 8341950  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 79
Target Start/End: Complemental strand, 26727604 - 26727551
Alignment:
Q  26 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttc 79  Q
    ||||||| |||||||||||| |||||||| || |||||||||| ||||||||||    
T  26727604 ctgagatcaaggtgttgcaactgtgagagttttccaagttgagaaggaatcttc 26727551  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 265
Target Start/End: Complemental strand, 8341366 - 8341306
Alignment:
Q  205 tattcactaacaaagatattcttttgtcttgtatgaaggnnnnnnnctagagaaattttgt 265  Q
    |||||||||||||||||| ||||||||||| ||||||||       |||||||||||||||    
T  8341366 tattcactaacaaagataatcttttgtcttatatgaaggaaaaaaactagagaaattttgt 8341306  T

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Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 242
Target Start/End: Original strand, 29229172 - 29229315
Alignment:
Q  104 acacacatatagaaaattgtgtttaaggaa--tgtgtattttcctgcttccttcttatcttaaacctgtaattttatcgtccatccatttaatgttcaaa 201  Q
    ||||||||| | | ||| ||||||||||||  ||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||||||||    
T  29229172 acacacatacaaagaatcgtgtttaaggaaggtgtgtattttcctgcttccttcttattgttaacctgtaattttatcgtccattcatttaatgttcaaa 29229271  T
Q  202 ---tcttattcactaacaaagatattcttttgtcttgtatgaag 242  Q
       |  ||||||||  |||||||| ||||||||||| |||||||    
T  29229272 aaattatattcactctcaaagataatcttttgtcttttatgaag 29229315  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 104 - 242
Target Start/End: Original strand, 29342472 - 29342615
Alignment:
Q  104 acacacatatagaaaattgtgtttaaggaa--tgtgtattttcctgcttccttcttatcttaaacctgtaattttatcgtccatccatttaatgttcaaa 201  Q
    ||||||||| | | ||| ||||||||||||  ||||||||||||||||||||||||||  | |||||||||||||||||||||| |||||||||||||||    
T  29342472 acacacatacaaagaatcgtgtttaaggaaggtgtgtattttcctgcttccttcttattgttaacctgtaattttatcgtccattcatttaatgttcaaa 29342571  T
Q  202 ---tcttattcactaacaaagatattcttttgtcttgtatgaag 242  Q
       |  ||||||||  |||||||| ||||||||||| |||||||    
T  29342572 aaattatattcactctcaaagataatcttttgtcttttatgaag 29342615  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 29228597 - 29228649
Alignment:
Q  29 agattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttccc 81  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  29228597 agatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatcttccc 29228649  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 29341896 - 29341948
Alignment:
Q  29 agattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttccc 81  Q
    |||| |||||||||||||||||||||||| |||||||||| ||||||||||||    
T  29341896 agatcaaggtgttgcaattgtgagagatttccaagttgagaaggaatcttccc 29341948  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 78
Target Start/End: Original strand, 44785757 - 44785809
Alignment:
Q  26 ctgagattaaggtgttgcaattgtgagagattcccaagttgagtaggaatctt 78  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  44785757 ctgagatcaaggtgtcgcaattgtgagagattcccaagttgagtaggaatctt 44785809  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 44612133 - 44612085
Alignment:
Q  29 agattaaggtgttgcaattgtgagagattcccaagttgagtaggaatct 77  Q
    |||| ||||||| ||||||||||||||||||||||||||| ||||||||    
T  44612133 agatcaaggtgtcgcaattgtgagagattcccaagttgagaaggaatct 44612085  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 34 - 81
Target Start/End: Complemental strand, 44144919 - 44144872
Alignment:
Q  34 aaggtgttgcaattgtgagagattcccaagttgagtaggaatcttccc 81  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||||||||    
T  44144919 aaggtgtcgcaatcgtgagagattcccaagttgagcaggaatcttccc 44144872  T

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Target: scaffold0061 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 29864 - 29916
Alignment:
Q  29 agattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttccc 81  Q
    |||| ||| ||| |||||||||| ||||||||||||||| |||||||||||||    
T  29864 agatcaagatgtcgcaattgtgatagattcccaagttgaataggaatcttccc 29916  T

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Target: scaffold0017 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 168928 - 168876
Alignment:
Q  29 agattaaggtgttgcaattgtgagagattcccaagttgagtaggaatcttccc 81  Q
    |||| ||| ||| |||||||||| ||||||||||||||| |||||||||||||    
T  168928 agatcaagatgtcgcaattgtgatagattcccaagttgaataggaatcttccc 168876  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 29507656 - 29507696
Alignment:
Q  26 ctgagattaaggtgttgcaattgtgagagattcccaagttg 66  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  29507656 ctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507696  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 29507728 - 29507768
Alignment:
Q  26 ctgagattaaggtgttgcaattgtgagagattcccaagttg 66  Q
    ||||||| |||||||||||||||||||||||| ||||||||    
T  29507728 ctgagatcaaggtgttgcaattgtgagagatttccaagttg 29507768  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 29507874 - 29507912
Alignment:
Q  28 gagattaaggtgttgcaattgtgagagattcccaagttg 66  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29507874 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507912  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 29507946 - 29507984
Alignment:
Q  28 gagattaaggtgttgcaattgtgagagattcccaagttg 66  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29507946 gagatcaaggtgttgcaattgtgagagatttccaagttg 29507984  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 29508090 - 29508128
Alignment:
Q  28 gagattaaggtgttgcaattgtgagagattcccaagttg 66  Q
    ||||| |||||||||||||||||||||||| ||||||||    
T  29508090 gagatcaaggtgttgcaattgtgagagatttccaagttg 29508128  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 63
Target Start/End: Original strand, 29508159 - 29508197
Alignment:
Q  25 tctgagattaaggtgttgcaattgtgagagattcccaag 63  Q
    |||||||| |||||||||||||||||||||||| |||||    
T  29508159 tctgagatcaaggtgttgcaattgtgagagatttccaag 29508197  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 29507584 - 29507624
Alignment:
Q  26 ctgagattaaggtgttgcaattgtgagagattcccaagttg 66  Q
    ||||||| ||||||||| |||||||||||||| ||||||||    
T  29507584 ctgagatcaaggtgttgtaattgtgagagatttccaagttg 29507624  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 29507800 - 29507840
Alignment:
Q  26 ctgagattaaggtgttgcaattgtgagagattcccaagttg 66  Q
    ||||||| ||| |||||||||||||||||||| ||||||||    
T  29507800 ctgagatcaagatgttgcaattgtgagagatttccaagttg 29507840  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 29508016 - 29508056
Alignment:
Q  26 ctgagattaaggtgttgcaattgtgagagattcccaagttg 66  Q
    ||||||| ||| |||||||||||||||||||| ||||||||    
T  29508016 ctgagatcaagatgttgcaattgtgagagatttccaagttg 29508056  T

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