View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_high_43 (Length: 254)
Name: NF17215_high_43
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_43 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 3745543 - 3745782
Alignment:
| Q |
1 |
cctctgttacatgttccattggataaaaaggatgtgtatgctctaaatctgtgtcggtatccacttgacgggtatttagcagattttaaaaatctacgag |
100 |
Q |
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| T |
3745543 |
cctctgttacatgttccattggataaaaaggatgtgtatgctctaaatctgtgtcggtatccacttgacgggtatttagcagatttcaaaaatctacgag |
3745642 |
T |
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| Q |
101 |
taacannnnnnnaatagaaaaaattgcaattaagtagaatattttcatcctgtcttttgacgacacaagaaaattatacacagaaattaatacagtgcac |
200 |
Q |
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| T |
3745643 |
taacatttttttaatagaaaaaattgcaattaagtagaatattttcatcctgtcttttgacgacacaagaaaattatacacagaaattaatacagtgcac |
3745742 |
T |
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| Q |
201 |
tcttacaccaatcaataaataaaatacatcacacattcat |
240 |
Q |
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| T |
3745743 |
tcttacaccaatcaattaataaaatacatcacacattcat |
3745782 |
T |
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