View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_high_44 (Length: 253)
Name: NF17215_high_44
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_44 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 240
Target Start/End: Original strand, 27083189 - 27083413
Alignment:
| Q |
16 |
aatatgcccttcgtaagacccgagtaccgttcatttcttttgggggtattgtcatggggatacctgcaaaggcaaatcacagactctgtctcttgaatct |
115 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27083189 |
aatatgcccttcgtaagacccgagacacgttcatttcttttgggggtattgtcatggggatacctgcaaaggcaaatcacagactctgtctcttgaatcc |
27083288 |
T |
|
| Q |
116 |
gctccttaaaatcttgagatgtgtcctgttgtagagccagagtcacttgctccactatattatccaatctacttgctacattccccatatgaaccctgct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27083289 |
gctccttaaaatcttgagatgtgtcctgttgtagagccagagtcacttgctccactatattatccaatctacttgctacattccccatatgaaccctgct |
27083388 |
T |
|
| Q |
216 |
tgtgttatataaaaataacttagtg |
240 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
27083389 |
tgtgttatataaaaataacttagtg |
27083413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 240
Target Start/End: Complemental strand, 27195112 - 27194888
Alignment:
| Q |
16 |
aatatgcccttcgtaagacccgagtaccgttcatttcttttgggggtattgtcatggggatacctgcaaaggcaaatcacagactctgtctcttgaatct |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27195112 |
aatatgcccttcgtaagacccgagacacgttcatttcttttgggggtattgtcatggggatacctgcaaaggcaaatcacagactctgtctcttgaatcc |
27195013 |
T |
|
| Q |
116 |
gctccttaaaatcttgagatgtgtcctgttgtagagccagagtcacttgctccactatattatccaatctacttgctacattccccatatgaaccctgct |
215 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27195012 |
gctccttaaaatcttgagatgtgtcctgttgtagagccagagtcacttgctccactatattatccaatctacttgctacattccccatatgaaccctgct |
27194913 |
T |
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| Q |
216 |
tgtgttatataaaaataacttagtg |
240 |
Q |
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||||||||||||||||||||||||| |
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| T |
27194912 |
tgtgttatataaaaataacttagtg |
27194888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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