View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_high_49 (Length: 236)
Name: NF17215_high_49
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_49 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 48 - 214
Target Start/End: Original strand, 3268995 - 3269161
Alignment:
| Q |
48 |
tgacagcttgaacaaagtgaagttctttaaaccaaactactactacctattcaatctacttgttctctttctaggttttttcctacctcaatcaatcatc |
147 |
Q |
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| T |
3268995 |
tgacagcttgaacaaagtgaagttctttaaaccaaactactactacccattcaatctacttgttctctttctaggtttttttctacctcaatcaatcatc |
3269094 |
T |
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| Q |
148 |
tagaacaaagattctagaatgttttgtgttnnnnnnntgatttggcttttgtggggttgaaaagggt |
214 |
Q |
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| T |
3269095 |
tagaacaaagattctagaatgttttgtgttaaaaaaatgatttggcttttgtggggttgaaaagggt |
3269161 |
T |
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