View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_high_5 (Length: 708)
Name: NF17215_high_5
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 628; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 14 - 692
Target Start/End: Original strand, 32855984 - 32856663
Alignment:
| Q |
14 |
atatacccacaatttgcatgtacttcaaagataccaataatcatgatctaaattacattttcattttctatcacaaaaattttaatataagctaaataag |
113 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32855984 |
atatacccacaatttgcatgtacttcaaagataccaataatcatgatctaaattacattttcattttctatcacaaaaattttaatataagctaaataag |
32856083 |
T |
|
| Q |
114 |
ttgtgtattattggaaaagaaaaataaaatgtttttactcnnnnnnnn-acctttgtcctagtggcagaggaggcaagagaaattgaagtagaaggattt |
212 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32856084 |
ttgtgtattattggaaaagaaaaataaaatgtttttactctttttttttacctttgtcctagtggcagaggaggtaagagaaattgaagtagaaggattt |
32856183 |
T |
|
| Q |
213 |
gatgactttgcaaaagaagacaacccaacattgtaagccatactttcatcaggctcaaataaaccatagctcctctctgaggttggtccattcttcatat |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
32856184 |
gatgactttgcaaaagaagacaacccaacattgtaagtcatactttcatcaggctcaaataaaccatagttcctctctgaggttggtccattcttcatat |
32856283 |
T |
|
| Q |
313 |
tttcattaaataatgcaaacaaatatgattccaatctcattctaggattcaaaggtgtcccttcattcttcatttgtctcctcaataaattcttgttata |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856284 |
tttcattaaataatgcaaacaaatatgattccaatctcattctaggattcaaaggtgtcccttcattcttcatttgtctcctcaataaattcttgttata |
32856383 |
T |
|
| Q |
413 |
aatttcagcatttttcaatgatgcaccaatttcatcagagtcacctttacttggccaaccagtctcagaaaccctaacttctatcccattaaaacctaat |
512 |
Q |
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| T |
32856384 |
aatttcagcatttttcaatgatgcaccaatttcatcagagtcacctttacttggccaaccagtctcagaaaccctaacttctatcccattaaaacctaat |
32856483 |
T |
|
| Q |
513 |
ttagcaattgcaaatgtaacagcatctaccatagcataaagcatgttatcataatgtaaatttgtattaggatcaaccattccttggttgggattaaata |
612 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
32856484 |
ttagcaattgcaaatgtaacagcatctaccatagcataaagcatgttatcataatgtaaatttgtattaggatcaaccattccttggttaggattaaata |
32856583 |
T |
|
| Q |
613 |
atacatagtctaaagatatttgattagggttattcttataagcaaaataaggataagcattgacccaaaagggtgatttt |
692 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32856584 |
atacatagtctaaagatatttgattagggtcattcttataagcaaaataaggataagcattgacccaaaagggtgatttt |
32856663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 545 - 673
Target Start/End: Complemental strand, 19220125 - 19219997
Alignment:
| Q |
545 |
agcataaagcatgttatcataatgtaaatttgtattaggatcaaccattccttggttgggattaaataatacatagtctaaagatatttgattagggtta |
644 |
Q |
| |
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|||||| | ||||||||||||||| |||||||| || |||||||||| |||| || || | ||||||| |||||| |||||||| | |||||||||| |
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| T |
19220125 |
agcatataacatgttatcataatgcaaatttgtgtttggatcaaccaaaccttcatttggttgaaataatgcatagtttaaagatacctcattagggtta |
19220026 |
T |
|
| Q |
645 |
ttcttataagcaaaataaggataagcatt |
673 |
Q |
| |
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| ||||| |||||| |||| |||||||| |
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|
| T |
19220025 |
tctttatatgcaaaaaaagggtaagcatt |
19219997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 288 - 692
Target Start/End: Complemental strand, 6292567 - 6292163
Alignment:
| Q |
288 |
tctgaggttggtccattcttcatattttcattaaataatgcaaacaaatatgattccaatctcattctaggattcaaaggtgtcccttcattcttcattt |
387 |
Q |
| |
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||||||||||||||| |||| || ||||||||| ||||||||||| || |||||| |||||||||||||||||||||||||||| |||| ||||| |
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| T |
6292567 |
tctgaggttggtccaggtttcaaatcttcattaaacaatgcaaacaagtaaacttccaacctcattctaggattcaaaggtgtcccttgattcgccattt |
6292468 |
T |
|
| Q |
388 |
gtctcctcaataaattcttgttataaatttcagcatttttcaatgatgcaccaatttcatcagagtcacctttacttggccaaccagtctcagaaaccct |
487 |
Q |
| |
|
||||| |||| || || | |||||| || ||||||||| | || ||||||| |||| | ||| ||| || |||||||| ||||| || ||||| |
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|
| T |
6292467 |
gtctcttcaacaagtttctattataagttgcagcattttgcggagaagcaccaacctcattcgggtcgcctctagaaggccaacccgtctcggataccct |
6292368 |
T |
|
| Q |
488 |
aacttctatcccattaaaacctaatttagcaattgcaaatgtaacagcatctaccatagcataaagcatgttatcataatgtaaatttgtattaggatca |
587 |
Q |
| |
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|||||| ||||| ||||| || | |||||| || | ||||| |||||||| |||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
6292367 |
aacttcaatccctttaaatcccattttagctatggaaaatgatacagcatcagccatagcataaagcatgttatcataatgtagatttgtggtaggatca |
6292268 |
T |
|
| Q |
588 |
accattccttggttgggattaaataatacatagtctaaagatatttgattagggttattcttataagcaaaataaggataagcattgacccaaaagggtg |
687 |
Q |
| |
|
||||||||||| | ||||||||||| |||||||| |||| ||| || || | || ||||| ||||| ||||| |||||||||| |||||| |||| |
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|
| T |
6292267 |
accattccttgactaggattaaataaaacatagtccaaaggaattgaatctggatcatctttatatgcaaagtaagggtaagcattgatccaaaaaggtg |
6292168 |
T |
|
| Q |
688 |
atttt |
692 |
Q |
| |
|
|||| |
|
|
| T |
6292167 |
ctttt |
6292163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 552 - 670
Target Start/End: Original strand, 34869131 - 34869249
Alignment:
| Q |
552 |
agcatgttatcataatgtaaatttgtattaggatcaaccattccttggttgggattaaataatacatagtctaaagatatttgattagggttattcttat |
651 |
Q |
| |
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||||||||||||||||| | ||||| || |||||||||||||||||||| || | ||| || ||||| ||||| |||||||| |||||||||| ||||| |
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| T |
34869131 |
agcatgttatcataatgcaggtttgtttttggatcaaccattccttggtttggttgaaacaaaacataatctaaggatatttgcttagggttatccttat |
34869230 |
T |
|
| Q |
652 |
aagcaaaataaggataagc |
670 |
Q |
| |
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||||||| ||||||||||| |
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|
| T |
34869231 |
aagcaaagtaaggataagc |
34869249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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