View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_high_6 (Length: 684)
Name: NF17215_high_6
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 18 - 669
Target Start/End: Complemental strand, 34328294 - 34327642
Alignment:
| Q |
18 |
gaaggtgtctgcgatgttggacatgaaacagactcatatgtttatatttaattaatctattttctcaaattattttcaatctcatgtccggtgtcggtgc |
117 |
Q |
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| T |
34328294 |
gaaggtgtctgcgatgttggacacgaaacagaatcatatgtttatatttaattaatctattttctcaaattattttcaatctcatgtccggtgttggtgc |
34328195 |
T |
|
| Q |
118 |
ttcatagtatatatcttttt-caacaatttcttttaaatttgaaaggacttatacttcatattttcattaagggaaaaactccctcatcaaagaagctga |
216 |
Q |
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|||||||||||||||||| | ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34328194 |
ttcatagtatatatctttctgcaacaatttattttaaatttgaaaggacttaaacttcatattttcattaagggaaaaactccctcatcaaagaagctga |
34328095 |
T |
|
| Q |
217 |
accacattaatgtgattaattctatgaacattaacacaaatatttagactttctattttacttttgagaagggaaactacaccttttacattggtttgtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34328094 |
accacattaatgtgattaattctatgaacattaacacaaatatttagactttctattttacttttgagaagggaaactacaccttttacattggtttgtg |
34327995 |
T |
|
| Q |
317 |
atttctgtctataagtataccggaaaccgctgccgtggcaagagaaactgttactcccaccaagactattttcttcttgtggacctcattggcattttct |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||||||| || |
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| T |
34327994 |
atttctgtctataagtataccggaaaccgctgccgtggcaagagaaactgtttctcccaccaaaactcctttcttcttgtgaccctcattggcatttcct |
34327895 |
T |
|
| Q |
417 |
aagtgaatttaaccaaacagaaaaccatagttagatcaaaatctcatacaggggacacaaatattcaatgattaatataacatatcataagctaagctca |
516 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34327894 |
aagtgaatttcaccaaacagaaaaccatagttagatcaaaatctcatacaggggacacaaatattcaatgattaatataagatatcataagctaagctca |
34327795 |
T |
|
| Q |
517 |
aaccgtctaatatcaattaaatcaccaaaccacaaggcacatccactcccttctcttacatctaaattttcatatgccatacaagaacaattatccaaac |
616 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
34327794 |
aactgtctaatatcaattaaatcaccaaaccacaaggcacatccactcccttctcttacatctaaatttgcatatgccatacaagaacaattatccaaac |
34327695 |
T |
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| Q |
617 |
acttcactctacattccttcaaaccaattgtctcatccaaccaactatctgtg |
669 |
Q |
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| T |
34327694 |
acttcactctacattccttcaaaccaattgtctcatccaaccaactatctgtg |
34327642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 523 - 571
Target Start/End: Original strand, 23562004 - 23562052
Alignment:
| Q |
523 |
ctaatatcaattaaatcaccaaaccacaaggcacatccactcccttctc |
571 |
Q |
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|||||||||||||||||||||||||||| | |||| ||||| ||||||| |
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| T |
23562004 |
ctaatatcaattaaatcaccaaaccacatgacacagccactgccttctc |
23562052 |
T |
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