View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_12 (Length: 502)
Name: NF17215_low_12
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 446; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 446; E-Value: 0
Query Start/End: Original strand, 2 - 471
Target Start/End: Complemental strand, 26880182 - 26879714
Alignment:
| Q |
2 |
cttgtacatattatacaatttacgctgggtttatttaaaggaatgaaccgctgtgtaggagtaggaagaaaagacactgagcgataagatgatactacac |
101 |
Q |
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| T |
26880182 |
cttgtacatattatacaatttacgctgggtttatttaaaggaatgaaccgctgtgtaggagcaggaagaaaagacactgagcgataagatgatactacac |
26880083 |
T |
|
| Q |
102 |
acatgcattgtcacgcacatttgaaaccgcctttgaaattttgttatttattgttttactggtatattttaaatcacattcaaatgtcaggttttatctt |
201 |
Q |
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| T |
26880082 |
acatgcattgtcacgcacatttgaaaccgcctttgaaattttgttatttattgttttactggtatattttaaatcacattcaaatgtcaagttttatctt |
26879983 |
T |
|
| Q |
202 |
cgtacttactagatctttgcgttttttctgcttttgctacatgtcatatttgttttgatctttattgccacaaaatttgcttgttgatgaattaaagcta |
301 |
Q |
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| T |
26879982 |
cgtacttactagatctttgcgttttttctgcttttgctacatgtcatatttgttttgatctttattgccacagaatttgcttgttgatgaattaaagcta |
26879883 |
T |
|
| Q |
302 |
gcagaaattggcccaaaatttgaacatcatgagatgttcccagcacggactaacagtcagattagtcaattttttatgatcgcaatatggctatcaactt |
401 |
Q |
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| T |
26879882 |
gcagaaattggcccaaaatttgaacattatgagatgttcccagcacggactaacagtcagattagtcaattttttatgatcgcaatatggctatcaactt |
26879783 |
T |
|
| Q |
402 |
tattatgatatttatcccatatacctacttcctcaaattttcatttcacctacaaggggtttttaattta |
471 |
Q |
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| T |
26879782 |
tattatgatatttatcccatatacctacttcctcaaattttcatttcacctacaa-gggtttttaattta |
26879714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 180 - 356
Target Start/End: Complemental strand, 40249539 - 40249366
Alignment:
| Q |
180 |
ttcaaatgtcaggttttatcttcgtacttactagatctttgcgttttttctgcttttgctacatgtcatatttgttttgatctttattgccacaaaattt |
279 |
Q |
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|||||| ||||| ||||||||| |||||| | |||||| | |||||||| |||| ||| ||||||||||||||||||||| | ||| ||| ||||| |
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| T |
40249539 |
ttcaaacgtcagcttttatctttgtacttgcaagatctcaacactttttctgattttccta-atgtcatatttgttttgatct--actgcaacagaattt |
40249443 |
T |
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| Q |
280 |
gcttgttgatgaattaaagctagcagaaattggcccaaaatttgaacatcatgagatgttcccagcacggactaaca |
356 |
Q |
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| T |
40249442 |
gcttgttgatgaattgaagctagcagaaattggcccaaaatttgaacatcacgaggtgttccctgcacgaactaaca |
40249366 |
T |
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