View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_16 (Length: 447)
Name: NF17215_low_16
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 30652768 - 30652586
Alignment:
| Q |
1 |
aaaaagagtagatctgtgttgtgagttgtgattaaacaaaaggatatgaaacgtgatggagaaattttagaagtggtgctgggtggaaaacaatcaaagg |
100 |
Q |
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| T |
30652768 |
aaaaagagtagagctgtgttgtgaggtgtgattaaacaaaaggatatgaaacgtgatggagaaattttagaagtggtgctgggtggaaaacaatcaaagg |
30652669 |
T |
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| Q |
101 |
gctcctagtctctttagcaaaacggttatcaaacacataatgcacaaaatggctaaaaagaaggaaacaaatgacaaccacgt |
183 |
Q |
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| T |
30652668 |
gcttctagtctctttagcaaaacggttatcaaacacataatgcacaaaatggctaaaaagaaggaaacaaatgacaaccacgt |
30652586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 241 - 432
Target Start/End: Complemental strand, 30652524 - 30652335
Alignment:
| Q |
241 |
cctcatcaaagagctaagtacaaacggttacacatttccaaaatccaaatgactacttccttgattttcttctgctttcttctctccgtctctgtcacag |
340 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30652524 |
cctcatcaaagagctaagcacaaacggttacacatttccaaaatccaaatgactacttccttgattttcttctgctttcttctctccgtctctgtcacag |
30652425 |
T |
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| Q |
341 |
ccacaggtactcttccagctactctccacnnnnnnnnatgcacatatatatattctttgaaacactgaacatgacactgacacgtaaacact |
432 |
Q |
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| T |
30652424 |
ccacaggtactcttctagctactcttcacttttttttatgcac--atatatattctttgaaacagtgaaaatgacactgacacgtaaacact |
30652335 |
T |
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