View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_18 (Length: 432)
Name: NF17215_low_18
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 12 - 416
Target Start/End: Complemental strand, 35205630 - 35205226
Alignment:
| Q |
12 |
gtagcataggcggagaatgtggatggtgctcgtgctgtattagaatgctcgggtttgtcattggttattgggattttgcaatctgcaaattcgagtgcgg |
111 |
Q |
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| T |
35205630 |
gtagcattggcggagaatgtggatggtgctcgtgctgtattagaatgctcgggtttgtcattggttattgggattttgcaatctgcaaattcgcgtgcgg |
35205531 |
T |
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| Q |
112 |
agaaggagtactgtgtttccattttggtttcactatgtgttaatgttggtggagaggttgttagtgttttggcgaagcatgcttcggggattatgccttt |
211 |
Q |
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| T |
35205530 |
agaaggagtactgtgtttccattttggtttcactatgtgttaatgttggtggagaggttgttagtgttttggcgaagcatgcttcggggattatgccttt |
35205431 |
T |
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| Q |
212 |
gctttatgcaaatcttaccgatggtactcctcaagcggagaagaaagcgcggaaacttattaatgtcttgcaagaatttgatgagaagaggactttggga |
311 |
Q |
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| T |
35205430 |
gctttatgcaaatcttaccgatggtactcctcaagcggagaagaaagcgcggaaacttattaatgtcttgcaagaatttgatgagaagaggactttggga |
35205331 |
T |
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| Q |
312 |
atggtaggttcttctgttatgcagcaaagattgcttcagttgaattagttagttagaaccttcttccttttttctctttgtgaataaatatagaatcata |
411 |
Q |
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| T |
35205330 |
atggtaggttcttctgttatgcagcaaagattgcttcagttgaattagttagttagaaccttcttccttttttctctttgtgaataaatatagaatcata |
35205231 |
T |
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| Q |
412 |
catac |
416 |
Q |
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| T |
35205230 |
catac |
35205226 |
T |
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