View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_19 (Length: 427)
Name: NF17215_low_19
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 16 - 410
Target Start/End: Complemental strand, 47333731 - 47333332
Alignment:
| Q |
16 |
aatatcatgattgtcgtgattgcagtataaaagaaaaatatga--ttcattgaattgaatatcc---ataaacaaaacaggataattaaaattgatcatg |
110 |
Q |
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| T |
47333731 |
aatatcatgattgtcgtgattgcagtataaaagacaaatatgaaattcattgaattgaatatcccatataaacaaaacaggataattaaaattgatcatg |
47333632 |
T |
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| Q |
111 |
aattcagcaaccccatctccaatttattacaaaaatcaacaataaaattacctaatgaccctcttcaaatcaaacaagaaaagaagcaatacgtttgacc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333631 |
aattcagcaaccccatctccaatttattacaaaaatcaacaataaaattacctaatgaccctcttcaaatcaaacaagaaaagaagcaatacgtttgacc |
47333532 |
T |
|
| Q |
211 |
atatcaatagaattctgagtttcaggatgataaatctgaaaacaatgttcttcaccttcaacatgaacaagttccacatcacctttccaaccacttttct |
310 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333531 |
atatcaatagaactctgagtttcaggatgataaatctgaaaacaatgttcttcaccttcaacatgaacaagttccacatcacctttccaaccacttttct |
47333432 |
T |
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| Q |
311 |
taacagcatcatagtaccaaatccctctgtctcttaaatcatcattcccagcaacaaaaatcaatatcttaggacaaccaataatatccaaacttggagc |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47333431 |
taacagcatcatagtaccaaatccctctgtctcttaaatcatcattcccagcaacaaaaatcaatatcttaggacaaccaataatatccaaacttggagc |
47333332 |
T |
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