View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_22 (Length: 409)
Name: NF17215_low_22
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 4 - 394
Target Start/End: Complemental strand, 5329633 - 5329243
Alignment:
| Q |
4 |
agaataaattggagagacattgacaatttgaagattaaattgatggtttattcgtatatttcccaaaataaactaaagaagcattaccagtacctttttg |
103 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329633 |
agaataaattggagagacattgacaatttgaagactaaattgatggtttattcgtttatttcccaaaataaactaaagaagcattaccagtacctttttg |
5329534 |
T |
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| Q |
104 |
gttgcacccaactccagttcaagagtactgactctggttagagcattattaagcatttcctctttttctggaggcatgacaggcttaacactgagaacag |
203 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329533 |
gttgcacccaactcctgttcaagagtactgactctggttagagcattattaagcatttcctctttttctggaggcatgacaggcttaacactgagaacag |
5329434 |
T |
|
| Q |
204 |
tgactttctcttcaagttcagccatgcgcttcatcatggccatatactcattgtttgaaattgcagctgcttttatcatggagccatcataatacactga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5329433 |
tgactttctcttcaagttcagccatgcgcttcatcatggccatatactcattgtttgaaattgcagctgcttttatcatggagccatcataatacactga |
5329334 |
T |
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| Q |
304 |
gttgccaccataaagtgctgcttctgtgattttccttggcatgctacttgtcatgcgaattatggtcacaattcccataacaagtgccatt |
394 |
Q |
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| T |
5329333 |
gttgccaccataaagtgctgcttctgtgattttccttggcatgctacttgtcatgcgaattatggtcacaattcccataacaagtgccatt |
5329243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 4 - 394
Target Start/End: Complemental strand, 54775796 - 54775406
Alignment:
| Q |
4 |
agaataaattggagagacattgacaatttgaagattaaattgatggtttattcgtatatttcccaaaataaactaaagaagcattaccagtacctttttg |
103 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775796 |
agaataaattggagagacattgacaatttgaagactaaattgatggtttattcgtttatttcccaaaataaactaaagaagcattaccagtacctttttg |
54775697 |
T |
|
| Q |
104 |
gttgcacccaactccagttcaagagtactgactctggttagagcattattaagcatttcctctttttctggaggcatgacaggcttaacactgagaacag |
203 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775696 |
gttgcacccaactcctgttcaagagtactgactctggttagagcattattaagcatttcctctttttctggaggcatgacaggcttaacactgagaacag |
54775597 |
T |
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| Q |
204 |
tgactttctcttcaagttcagccatgcgcttcatcatggccatatactcattgtttgaaattgcagctgcttttatcatggagccatcataatacactga |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775596 |
tgactttctcttcaagttcagccatgcgcttcatcatggccatatactcattgtttgaaattgcagctgcttttatcatggagccatcataatacactga |
54775497 |
T |
|
| Q |
304 |
gttgccaccataaagtgctgcttctgtgattttccttggcatgctacttgtcatgcgaattatggtcacaattcccataacaagtgccatt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54775496 |
gttgccaccataaagtgctgcttctgtgattttccttggcatgctacttgtcatgcgaattatggtcacaattcccataacaagtgccatt |
54775406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 28 - 56
Target Start/End: Original strand, 37080400 - 37080428
Alignment:
| Q |
28 |
aatttgaagattaaattgatggtttattc |
56 |
Q |
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| T |
37080400 |
aatttgaagattaaattgatggtttattc |
37080428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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