View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17215_low_24 (Length: 396)
Name: NF17215_low_24
Description: NF17215
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17215_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 12 - 379
Target Start/End: Complemental strand, 15728155 - 15727791
Alignment:
| Q |
12 |
atgaaccacgaaaaaagattttaaaggtagacccttacaattttattaggacccaattttgaagattagaacagaatttccaatttcagtttcagaaagg |
111 |
Q |
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| T |
15728155 |
atgaaccacgaaaaaagattttaaaggtagacccttacaattttattagggcccaattttgaagattagaacagaatttccaatttcagtttgagaaagg |
15728056 |
T |
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| Q |
112 |
tatgttnnnnnnnttctaaaatattgaattttatatgattaggaccacaattagctagccttgacaatgataggtcactatcagaagtaaatttgatatt |
211 |
Q |
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| T |
15728055 |
tatgttaaaaaaattataaactattgaattctatatgattaggaccacaattagctagccttgacaatgataggtcactataagaagtaaatttgacatt |
15727956 |
T |
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| Q |
212 |
taaatttcatttttcgtacatacagatatttttgagaagtttaagaaccacaatggaaattttaaggcatgtcttgtccaagatatcaaaggaatgttaa |
311 |
Q |
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| T |
15727955 |
tga-tttgttttttcgtacata--gatatttttgagaagtttaaggaccacaatggaaattttaaggcatgtcttgtccaagatatcaaaggaatgttaa |
15727859 |
T |
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| Q |
312 |
gtctctacgatgcatcatttctatcttatgaaggagaacaaattttgaatgaagccaatgctttcact |
379 |
Q |
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| T |
15727858 |
gtctctacgatgcatcatttctatcttatgaaggagaacaaattttggatgaagccaatgctttcact |
15727791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 35026622 - 35026384
Alignment:
| Q |
12 |
atgaaccacgaaaaaagattttaaaggtagacccttacaattttattaggacccaattttgaagattagaacagaatttccaatttcagtttcagaaagg |
111 |
Q |
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| T |
35026622 |
atgaaccacgaaaaaagattttaaaggtagacccttacaattttattaggacccaattttgaagattagaacagaatttccaatttcagtttgagaaagg |
35026523 |
T |
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| Q |
112 |
tatgttnnnnnnnttctaaaatattgaattttatatgattaggaccacaattagctagccttgacaatgataggtcactatcagaagtaaatttgatatt |
211 |
Q |
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| T |
35026522 |
tatgttaaaaaaattataaactattgaattctatatgattaggaccacaattagctagccttgacaatgataggtcactatcagaagtaaatttgatatt |
35026423 |
T |
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| Q |
212 |
taaatttcatttttcgtacatacagatatttttgagaag |
250 |
Q |
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| T |
35026422 |
taaatttcatttttcgtacatacagatatttttgagaag |
35026384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 329 - 379
Target Start/End: Complemental strand, 35026365 - 35026315
Alignment:
| Q |
329 |
tttctatcttatgaaggagaacaaattttgaatgaagccaatgctttcact |
379 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35026365 |
tttctatcttatgaaggagaacaaattttggatgaagccaatgctttcact |
35026315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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